Identification of DNA N6-methyladenine sites by integration of sequence features

i6mA-Pred: Identifying DNA N6-methyladenine sites in the rice genome

(2019) Wei Chen et al.   BIOINFORMATICS

MM-6mAPred: identifying DNA N6-methyladenine sites based on Markov model

(2019) Cong Pian et al.   BIOINFORMATICS

70ProPred: a predictor for discovering sigma70 promoters based on combining multiple features

(2018) Wenying He et al.   BMC Systems Biology

The rise of deep learning in drug discovery

(2018) Hongming Chen et al.   DRUG DISCOVERY TODAY

iDNA6mA-PseKNC: Identifying DNA N 6 -methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC

(2018) Pengmian Feng et al.   GENOMICS

RCLens: Interactive Rare Category Exploration and Identification

(2018) Hanfei Lin et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

NucPosPred: Predicting species-specific genomic nucleosome positioning via four different modes of general PseKNC

(2018) Cangzhi Jia et al.   JOURNAL OF THEORETICAL BIOLOGY

N 6 -Methyladenine DNA Modification in the Human Genome

(2018) Chuan-Le Xiao et al.   MOLECULAR CELL

4mCPred: Machine Learning Methods for DNA N4-methylcytosine sites Prediction

(2018) Wenying He et al.   BIOINFORMATICS

Enhanced Prediction of Hot Spots at Protein-Protein Interfaces Using Extreme Gradient Boosting

(2018) Hao Wang et al.   Scientific Reports

EnhancerPred2.0: predicting enhancers and their strength based on position-specific trinucleotide propensity and electron–ion interaction potential feature selection

(2017) Wenying He et al.   Molecular BioSystems

Recognition of prokaryotic and eukaryotic promoters using convolutional deep learning neural networks

(2017) Ramzan Kh. Umarov et al.   PLoS One

SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification

(2016) João Victor de Araujo Oliveira et al.   BMC BIOINFORMATICS

Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy

(2016) Quan Zou et al.   BMC Systems Biology

MethSMRT: an integrative database for DNA N6-methyladenine and N4-methylcytosine generated by single-molecular real-time sequencing

(2016) Pohao Ye et al.   NUCLEIC ACIDS RESEARCH

Long-read sequencing and de novo assembly of a Chinese genome

(2016) Lingling Shi et al.   Nature Communications

iDNA-Methyl: Identifying DNA methylation sites via pseudo trinucleotide composition

(2015) Zi Liu et al.   ANALYTICAL BIOCHEMISTRY

DNA Methylation on N6-Adenine in C. elegans

(2015) Eric Lieberman Greer et al.   CELL

N6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas

(2015) Ye Fu et al.   CELL

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

(2015) Konstantin Berlin et al.   NATURE BIOTECHNOLOGY

iHyd-PseAAC: Predicting Hydroxyproline and Hydroxylysine in Proteins by Incorporating Dipeptide Position-Specific Propensity into Pseudo Amino Acid Composition

(2014) Yan Xu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

ptRNApred: computational identification and classification of post-transcriptional RNA

(2014) Yask Gupta et al.   NUCLEIC ACIDS RESEARCH

Diverse Functions of Restriction-Modification Systems in Addition to Cellular Defense

(2013) K. Vasu et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition

(2013) Yan Xu et al.   PLoS One

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

An Improved Position Weight Matrix method based on an entropy measure for the recognition of prokaryotic promoters

(2011) Qinqin Wu et al.   International Journal of Data Mining and Bioinformatics

Recognition of prokaryotic promoters based on a novel variable-window Z-curve method

(2011) Kai Song   NUCLEIC ACIDS RESEARCH

Predicting Apoptosis Protein Subcellular Location with PseAAC by Incorporating Tripeptide Composition

(2011) Bo Liao et al.   PROTEIN AND PEPTIDE LETTERS

Genomic N6-methyladenine determination by MEKC with LIF

(2010) Annette M. Krais et al.   ELECTROPHORESIS

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

Genome-wide high throughput analysis of DNA methylation in eukaryotes

(2008) Kyle R. Pomraning et al.   METHODS