Modeling of the Coral Microbiome: the Influence of Temperature and Microbial Network

The effect of dissolved nickel and copper on the adult coral Acropora muricata and its microbiome

(2019) Francesca Gissi et al.   ENVIRONMENTAL POLLUTION

Microbial indicators of environmental perturbations in coral reef ecosystems

(2019) Bettina Glasl et al.   Microbiome

Reproductive ecology and early life history traits of the brooding coral, Porites astreoides, from shallow to mesophotic zones

(2018) Gretchen Goodbody-Gringley et al.   CORAL REEFS

Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption

(2018) Jeremiah J. Minich et al.   PLoS One

Spatial and temporal patterns of mass bleaching of corals in the Anthropocene

(2018) Terry P. Hughes et al.   SCIENCE

High Throughput Sequencing and Network Analysis Disentangle the Microbial Communities of Ticks and Hosts Within and Between Ecosystems

(2018) Agustín Estrada-Peña et al.   Frontiers in Cellular and Infection Microbiology

Rhodoliths holobionts in a changing ocean: host-microbes interactions mediate coralline algae resilience under ocean acidification

(2018) Giselle S. Cavalcanti et al.   BMC GENOMICS

Microbiome dynamics of two differentially resilient corals

(2018) ZA Pratte et al.   DISEASES OF AQUATIC ORGANISMS

Coral microbiome database: Integration of sequences reveals high diversity and relatedness of coral-associated microbes

(2018) Megan J. Huggett et al.   Environmental Microbiology Reports

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

(2018) F. Joseph Pollock et al.   Nature Communications

Disentangling causation: complex roles of coral-associated microorganisms in disease

(2017) Hanaka Mera et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial indicators as a diagnostic tool for assessing water quality and climate stress in coral reef ecosystems

(2017) Bettina Glasl et al.   MARINE BIOLOGY

Antagonistic Interactions and Biofilm Forming Capabilities Among Bacterial Strains Isolated from the Egg Surfaces of Lake Sturgeon (Acipenser fulvescens)

(2017) M. Fujimoto et al.   MICROBIAL ECOLOGY

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software

(2017) Alexander Sczyrba et al.   NATURE METHODS

Disentangling Interactions in the Microbiome: A Network Perspective

(2017) Mehdi Layeghifard et al.   TRENDS IN MICROBIOLOGY

The skin microbiome of the common thresher shark (Alopias vulpinus ) has low taxonomic and gene function β-diversity

(2017) Michael P. Doane et al.   Environmental Microbiology Reports

Bacterial community dynamics are linked to patterns of coral heat tolerance

(2017) Maren Ziegler et al.   Nature Communications

Beneficial Microorganisms for Corals (BMC): Proposed Mechanisms for Coral Health and Resilience

(2017) Raquel S. Peixoto et al.   Frontiers in Microbiology

Aura-biomes are present in the water layer above coral reef benthic macro-organisms

(2017) Kevin Walsh et al.   PeerJ

Alien vs. predator: bacterial challenge alters coral microbiomes unless controlled by Halobacteriovorax predators

(2017) Rory M. Welsh et al.   PeerJ

Season, but not symbiont state, drives microbiome structure in the temperate coral Astrangia poculata

(2017) Koty H. Sharp et al.   Microbiome

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Environmental controls on modern scleractinian coral and reef-scale calcification

(2017) Travis A. Courtney et al.   Science Advances

Insights into the Coral Microbiome: Underpinning the Health and Resilience of Reef Ecosystems

(2016) David G. Bourne et al.   Annual Review of Microbiology

Temperature affects microbial abundance, activity and interactions in anaerobic digestion

(2016) Qiang Lin et al.   BIORESOURCE TECHNOLOGY

Distinct biogeographical patterns of marine bacterial taxonomy and functional genes

(2016) John Matthew Haggerty et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance

(2016) Bettina Glasl et al.   ISME Journal

Bright spots among the world’s coral reefs

(2016) Joshua E. Cinner et al.   NATURE

Caribbean corals house shared and host-specific microbial symbionts over time and space

(2016) Nathaniel D. Chu et al.   Environmental Microbiology Reports

Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales

(2016) Jesse R. Zaneveld et al.   Nature Communications

Global microbialization of coral reefs

(2016) Andreas F. Haas et al.   Nature Microbiology

Distinguishing between Microbial Habitats Unravels Ecological Complexity in Coral Microbiomes

(2016) Amy Apprill et al.   mSystems

Topological distortion and reorganized modular structure of gut microbial co-occurrence networks in inflammatory bowel disease

(2016) Steven N. Baldassano et al.   Scientific Reports

Chlamydial seasonal dynamics and isolation of ‘C andidatus  Neptunochlamydia vexilliferae’ from a Tyrrhenian coastal lake

(2015) Ilaria Pizzetti et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterioplankton community resilience to ocean acidification: evidence from microbial network analysis

(2015) Yu Wang et al.   ICES JOURNAL OF MARINE SCIENCE

Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix

(2015) Olga Pantos et al.   ISME Journal

Avian Influenza Dynamics Under Periodic Environmental Conditions

(2015) Naveen K. Vaidya et al.   SIAM JOURNAL ON APPLIED MATHEMATICS

Nitrogen cycling in corals: the key to understanding holobiont functioning?

(2015) Nils Rädecker et al.   TRENDS IN MICROBIOLOGY

Persistent shifts in Caribbean coral microbiota are linked to the 2010 warm thermal anomaly

(2015) Allison M. Tracy et al.   Environmental Microbiology Reports

Projections of climate conditions that increase coral disease susceptibility and pathogen abundance and virulence

(2015) Jeffrey Maynard et al.   Nature Climate Change

Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes

(2015) Seth R. Bordenstein et al.   PLOS BIOLOGY

Incidence of lesions on Fungiidae corals in the eastern Red Sea is related to water temperature and coastal pollution

(2014) K.A. Furby et al.   MARINE ENVIRONMENTAL RESEARCH

Variability in Microbial Community Composition and Function Between Different Niches Within a Coral Reef

(2014) Jessica Tout et al.   MICROBIAL ECOLOGY

Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors

(2014) L. W. Kelly et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The engine of the reef: photobiology of the coral–algal symbiosis

(2014) Melissa S. Roth   Frontiers in Microbiology

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares

(2014) Genivaldo Gueiros Z. Silva et al.   PeerJ

Multivariate analysis of functional metagenomes

(2014) Elizabeth Dinsdale   Frontiers in Genetics

Environmental disruption of host–microbe co-adaptation as a potential driving force in evolution

(2014) Yoav Soen   Frontiers in Genetics

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Microbes, metagenomes and marine mammals: enabling the next generation of scientist to enter the genomic era

(2013) Robert Edwards et al.   BMC GENOMICS

Chronic nutrient enrichment increases prevalence and severity of coral disease and bleaching

(2013) Rebecca L. Vega Thurber et al.   GLOBAL CHANGE BIOLOGY

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists

(2013) Cheryl-Emiliane T Chow et al.   ISME Journal

The amphibian skin-associated microbiome across species, space and life history stages

(2013) Jordan G. Kueneman et al.   MOLECULAR ECOLOGY

DMSP biosynthesis by an animal and its role in coral thermal stress response

(2013) Jean-Baptiste Raina et al.   NATURE

Mathematical modeling of primary succession of murine intestinal microbiota

(2013) S. Marino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coral-associated micro-organisms and their roles in promoting coral health and thwarting diseases

(2013) C. J. Krediet et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Influence of coral and algal exudates on microbially mediated reef metabolism

(2013) Andreas F. Haas et al.   PeerJ

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Relationships between temperature, bleaching and white syndrome on the Great Barrier Reef

(2012) S. S. Ban et al.   CORAL REEFS

Small change, big difference: Sea surface temperature distributions for tropical coral reef ecosystems, 1950-2011

(2012) J. M. Lough   JOURNAL OF GEOPHYSICAL RESEARCH

Cold induces acute stress but heat is ultimately more deleterious for the reef-building coral Acropora yongei

(2012) Melissa S. Roth et al.   Scientific Reports

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Planula release and reproductive seasonality of the scleractinian coral Porites astreoides in Bermuda, a high-latitude reef

(2011) SJ de Putron et al.   BULLETIN OF MARINE SCIENCE

Catastrophic mortality on inshore coral reefs of the Florida Keys due to severe low-temperature stress

(2011) Dustin W. Kemp et al.   GLOBAL CHANGE BIOLOGY

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Unravelling the effects of the environment and host genotype on the gut microbiome

(2011) Aymé Spor et al.   NATURE REVIEWS MICROBIOLOGY

Elevated seawater temperature causes a microbial shift on crustose coralline algae with implications for the recruitment of coral larvae

(2010) Nicole S Webster et al.   ISME Journal

The impact of reduced pH on the microbial community of the coral Acropora eurystoma

(2010) Dalit Meron et al.   ISME Journal

Changes in Caribbean coral disease prevalence after the 2005 bleaching event

(2009) A Cróquer et al.   DISEASES OF AQUATIC ORGANISMS

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

Antagonistic interactions among coral-associated bacteria

(2009) Krystal L. Rypien et al.   ENVIRONMENTAL MICROBIOLOGY

Coral mucus-associated bacteria: a possible first line of defense

(2009) Maya Shnit-Orland et al.   FEMS MICROBIOLOGY ECOLOGY

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

(2009) Iwanka Kozarewa et al.   NATURE METHODS

Resilience of Coral-Associated Bacterial Communities Exposed to Fish Farm Effluent

(2009) Melissa Garren et al.   PLoS One

Global distribution and diversity of coral-associatedArchaeaand their possible role in the coral holobiont nitrogen cycle

(2008) Nachshon Siboni et al.   ENVIRONMENTAL MICROBIOLOGY

De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer

(2008) D. Hernandez et al.   GENOME RESEARCH

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE

Microbial Ecology of Four Coral Atolls in the Northern Line Islands

(2008) Elizabeth A. Dinsdale et al.   PLoS One