The skin microbiome of the common thresher shark (Alopias vulpinus ) has low taxonomic and gene function β-diversity

Microbiome evolution along divergent branches of the vertebrate tree of life: what is known and unknown

(2016) Timothy J. Colston et al.   MOLECULAR ECOLOGY

Transition from freshwater to seawater reshapes the skin-associated microbiota of Atlantic salmon

(2016) Jep Lokesh et al.   Scientific Reports

Local and global consequences of flow on bacterial quorum sensing

(2016) Minyoung Kevin Kim et al.   Nature Microbiology

Global microbialization of coral reefs

(2016) Andreas F. Haas et al.   Nature Microbiology

Microbes in flow

(2015) Roberto Rusconi et al.   CURRENT OPINION IN MICROBIOLOGY

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

Rethinking heritability of the microbiome

(2015) Edward J. van Opstal et al.   SCIENCE

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

Blacktip reef sharks (Carcharhinus melanopterus) show high capacity for wound healing and recovery following injury

(2015) Andrew Chin et al.   Conservation Physiology

The Importance of Microbes in Animal Development: Lessons from the Squid-Vibrio Symbiosis

(2014) Margaret J. McFall-Ngai   Annual Review of Microbiology

A C-type lectin isolated from the skin of Japanese bullhead shark (Heterodontus japonicus) binds a remarkably broad range of sugars and induces blood coagulation

(2014) Shigeyuki Tsutsui et al.   JOURNAL OF BIOCHEMISTRY

Elephant shark genome provides unique insights into gnathostome evolution

(2014) Byrappa Venkatesh et al.   NATURE

Biogeography and individuality shape function in the human skin metagenome

(2014) Julia Oh et al.   NATURE

Humpback Whale Populations Share a Core Skin Bacterial Community: Towards a Health Index for Marine Mammals?

(2014) Amy Apprill et al.   PLoS One

Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors

(2014) L. W. Kelly et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition

(2014) Yan Wei Lim et al.   PeerJ

Multivariate analysis of functional metagenomes

(2014) Elizabeth Dinsdale   Frontiers in Genetics

Mechanisms of maternal transfer of organochlorine contaminants and mercury in the common thresher shark (Alopias vulpinus)

(2013) Kady Lyons et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Diversity of the skin microbiota of fishes: evidence for host species specificity

(2013) Andrea Larsen et al.   FEMS MICROBIOLOGY ECOLOGY

Host-specific adaptation governs the interaction of the marine diatom, Pseudo-nitzschia and their microbiota

(2013) Marilou P Sison-Mangus et al.   ISME Journal

Reference-independent comparative metagenomics using cross-assembly: crAss

(2012) Bas E. Dutilh et al.   BIOINFORMATICS

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

(2012) Andreas Wilke et al.   BMC BIOINFORMATICS

Bacteria as vitamin suppliers to their host: a gut microbiota perspective

(2012) Jean Guy LeBlanc et al.   CURRENT OPINION IN BIOTECHNOLOGY

Oxygen minimum zones harbour novel viral communities with low diversity

(2012) Noriko Cassman et al.   ENVIRONMENTAL MICROBIOLOGY

Black reefs: iron-induced phase shifts on coral reefs

(2012) Linda Wegley Kelly et al.   ISME Journal

Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis

(2012) Thomas Danhorn et al.   ISME Journal

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Basics of skin structure and function in elasmobranchs: a review

(2012) W. Meyer et al.   JOURNAL OF FISH BIOLOGY

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Defining the human microbiome

(2012) Luke K Ursell et al.   NUTRITION REVIEWS

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

(2012) Chengwei Luo et al.   PLoS One

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts

(2012) L. Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interactions Between the Microbiota and the Immune System

(2012) L. V. Hooper et al.   SCIENCE

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

The characterization, replication and testing of dermal denticles ofScyliorhinus caniculafor physical mechanisms of biofouling prevention

(2011) Timothy Sullivan et al.   Bioinspiration & Biomimetics

Co-habiting amphibian species harbor unique skin bacterial communities in wild populations

(2011) Valerie J McKenzie et al.   ISME Journal

Micropatterned Surfaces for Reducing the Risk of Catheter-Associated Urinary Tract Infection: An In Vitro Study on the Effect of Sharklet Micropatterned Surfaces to Inhibit Bacterial Colonization and Migration of Uropathogenic Escherichia coli

(2011) Shravanthi T. Reddy et al.   JOURNAL OF ENDOUROLOGY

Microbial Symbiosis with the Innate Immune Defense System of the Skin

(2011) Richard L. Gallo et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

(2011) S. Greenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist

(2010) Marti J. Anderson et al.   ECOLOGY LETTERS

Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis

(2010) Catherine Burke et al.   ISME Journal

Movement patterns and nursery habitat of juvenile thresher sharksAlopias vulpinusin the Southern California Bight

(2010) D Cartamil et al.   MARINE ECOLOGY PROGRESS SERIES

From Structure to Function: the Ecology of Host-Associated Microbial Communities

(2010) C. J. Robinson et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Microbiota restoration: natural and supplemented recovery of human microbial communities

(2010) Gregor Reid et al.   NATURE REVIEWS MICROBIOLOGY

Microbial Iron Acquisition: Marine and Terrestrial Siderophores

(2009) Moriah Sandy et al.   CHEMICAL REVIEWS

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

Common Skate (Raja kenojei) Secretes Pentraxin into the Cutaneous Secretion: The First Skin Mucus Lectin in Cartilaginous Fish

(2009) S. Tsutsui et al.   JOURNAL OF BIOCHEMISTRY

Selective Extraction of Bacterial DNA from the Surfaces of Macroalgae

(2008) C. Burke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Comparison of antimicrobial activity in the epidermal mucus extracts of fish

(2008) Sangeetha Subramanian et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico

(2008) Mya Breitbart et al.   ENVIRONMENTAL MICROBIOLOGY

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE

Microbial Ecology of Four Coral Atolls in the Northern Line Islands

(2008) Elizabeth A. Dinsdale et al.   PLoS One