Deep-sea amphipods around cobalt-rich ferromanganese crusts: Taxonomic diversity and selection of candidate species for connectivity analysis

Managing a sustainable deep-sea ‘blue economy’ requires knowledge of what actually lives there

(2018) Adrian G Glover et al.   eLife

Invertebrate population genetics across Earth's largest habitat: The deep-sea floor

(2017) M. L. Taylor et al.   MOLECULAR ECOLOGY

Isolation and Characterization of Microsatellite DNA Markers in the Deep-Sea AmphipodParalicella tenuipesby Illumina MiSeq Sequencing

(2016) Heather Ritchie et al.   JOURNAL OF HEREDITY

A synthesis of genetic connectivity in deep-sea fauna and implications for marine reserve design

(2016) Amy R. Baco et al.   MOLECULAR ECOLOGY

Quantifying dispersal from hydrothermal vent fields in the western Pacific Ocean

(2016) Satoshi Mitarai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A biogeographic network reveals evolutionary links between deep-sea hydrothermal vent and methane seep faunas

(2016) Steffen Kiel   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

(2016) Wei Shen et al.   PLoS One

Phylogenetic relationships among hadal amphipods of the Superfamily Lysianassoidea: Implications for taxonomy and biogeography

(2015) H. Ritchie et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Genetic population structure of four hydrothermal vent shrimp species (Alvinocarididae) in the Okinawa Trough, Northwest Pacific

(2015) T Yahagi et al.   MARINE ECOLOGY PROGRESS SERIES

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

Genetic population structure of four hydrothermal vent shrimp species (Alvinocarididae) in the Okinawa Trough, Northwest Pacific

(2015) T Yahagi et al.   MARINE ECOLOGY PROGRESS SERIES

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A general species delimitation method with applications to phylogenetic placements

(2013) Jiajie Zhang et al.   BIOINFORMATICS

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Deep-sea amphipod community structure across abyssal to hadal depths in the Peru-Chile and Kermadec trenches

(2013) T Fujii et al.   MARINE ECOLOGY PROGRESS SERIES

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

ezRAD: a simplified method for genomic genotyping in non-model organisms

(2013) Robert J. Toonen et al.   PeerJ

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

The Ecology of Seamounts: Structure, Function, and Human Impacts

(2009) Malcolm R. Clark et al.   Annual Review of Marine Science