Quantitative PCR provides a simple and accessible method for quantitative microbiota profiling

Establishing microbial composition measurement standards with reference frames

(2019) James T. Morton et al.   Nature Communications

Saturated Fat Is More Metabolically Harmful for the Human Liver Than Unsaturated Fat or Simple Sugars

(2018) Panu K. Luukkonen et al.   DIABETES CARE

Reproducibility and repeatability of six high-throughput 16S rDNA sequencing protocols for microbiota profiling

(2018) Sajan C. Raju et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Best practices for analysing microbiomes

(2018) Rob Knight et al.   NATURE REVIEWS MICROBIOLOGY

Intestinal microbiota development and gestational age in preterm neonates

(2018) Katri Korpela et al.   Scientific Reports

Absolute quantitation of microbiota abundance in environmental samples

(2018) Andrzej Tkacz et al.   Microbiome

PCR-based quantification of taxa-specific abundances in microbial communities: Quantifying and avoiding common pitfalls

(2018) Fabian Bonk et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Probiotic supplementation restores normal microbiota composition and function in antibiotic-treated and in caesarean-born infants

(2018) Katri Korpela et al.   Microbiome

Specific substrate-driven changes in human faecal microbiota composition contrast with functional redundancy in short-chain fatty acid production

(2017) Nicole Reichardt et al.   ISME Journal

Quantitative microbiome profiling links gut community variation to microbial load

(2017) Doris Vandeputte et al.   NATURE

Towards standards for human fecal sample processing in metagenomic studies

(2017) Paul I Costea et al.   NATURE BIOTECHNOLOGY

Composition and immuno-stimulatory properties of extracellular DNA from mouse gut flora

(2017) Ce Qi et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

Compositional data analysis of the microbiome: fundamentals, tools, and challenges

(2016) Matthew C.B. Tsilimigras et al.   ANNALS OF EPIDEMIOLOGY

Formation of propionate and butyrate by the human colonic microbiota

(2016) Petra Louis et al.   ENVIRONMENTAL MICROBIOLOGY

Absolute quantification of microbial taxon abundances

(2016) Ruben Props et al.   ISME Journal

Flow Cytometric Assessment of Bacterial Abundance in Soils, Sediments and Sludge

(2016) Aline Frossard et al.   Frontiers in Microbiology

Adjusting microbiome profiles for differences in microbial load by spike-in bacteria

(2016) Frank Stämmler et al.   Microbiome

Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants

(2015) Zachery T Lewis et al.   Microbiome

Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution

(2014) Mikhail Tikhonov et al.   ISME Journal

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

Combining real-time PCR and next-generation DNA sequencing to provide quantitative comparisons of fungal aerosol populations

(2013) Karen C. Dannemiller et al.   ATMOSPHERIC ENVIRONMENT

Amplification by PCR Artificially Reduces the Proportion of the Rare Biosphere in Microbial Communities

(2012) Juan M. Gonzalez et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis

(2010) Anne Salonen et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Use of flow cytometric methods for single-cell analysis in environmental microbiology

(2008) Kamila Czechowska et al.   CURRENT OPINION IN MICROBIOLOGY

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols