Elucidation of leak-resistance DNA hybridization chain reaction with universality and extensibility

Length-Dependent Melting Kinetics of Short DNA Oligonucleotides Using Temperature-Jump IR Spectroscopy

(2019) Ryan J. Menssen et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Mechanisms of DNA hybridization: Transition path analysis of a simulation-informed Markov model

(2019) Raymond Jin et al.   JOURNAL OF CHEMICAL PHYSICS

Surface-Enhanced Raman Spectroscopy for Bioanalysis: Reliability and Challenges

(2018) Cheng Zong et al.   CHEMICAL REVIEWS

Exosomal miRNAs as novel cancer biomarkers: Challenges and opportunities

(2018) Mahsa Salehi et al.   JOURNAL OF CELLULAR PHYSIOLOGY

High spatial resolution nanoslit SERS for single-molecule nucleobase sensing

(2018) Chang Chen et al.   Nature Communications

Improving the Performance of DNA Strand Displacement Circuits by Shadow Cancellation

(2018) Tianqi Song et al.   ACS Nano

Effective design principles for leakless strand displacement systems

(2018) Boya Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Kinetics of DNA Strand Displacement Systems with Locked Nucleic Acids

(2017) Xiaoping Olson et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Multi-Arm Junctions for Dynamic DNA Nanotechnology

(2017) Shohei Kotani et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Predicting DNA hybridization kinetics from sequence

(2017) Jinny X. Zhang et al.   Nature Chemistry

DNA melting and energetics of the double helix

(2017) Alexander Vologodskii et al.   Physics of Life Reviews

Enzyme-free nucleic acid dynamical systems

(2017) Niranjan Srinivas et al.   SCIENCE

Highly sensitive electrochemical biosensor based on nonlinear hybridization chain reaction for DNA detection

(2016) Liping Jia et al.   BIOSENSORS & BIOELECTRONICS

Sensitive SERS detection of miRNA via enzyme-free DNA machine signal amplification

(2016) Xiaoxiao Li et al.   CHEMICAL COMMUNICATIONS

Rational design of hybridization chain reaction monomers for robust signal amplification

(2016) Yan Shan Ang et al.   CHEMICAL COMMUNICATIONS

Engineering a robust DNA split proximity circuit with minimized circuit leakage

(2016) Yan Shan Ang et al.   NUCLEIC ACIDS RESEARCH

Physics of base-pairing dynamics in DNA

(2016) Manoel Manghi et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Kinetic selection vs. free energy of DNA base pairing in control of polymerase fidelity

(2016) Keriann Oertell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Native characterization of nucleic acid motif thermodynamics via non-covalent catalysis

(2016) Chunyan Wang et al.   Nature Communications

Modulating the DNA strand-displacement kinetics with the one-sided remote toehold design for differentiation of single-base mismatched DNA

(2016) Chenxi Li et al.   RSC Advances

Availability: A Metric for Nucleic Acid Strand Displacement Systems

(2016) Xiaoping Olson et al.   ACS Synthetic Biology

ExtraPEG: A Polyethylene Glycol-Based Method for Enrichment of Extracellular Vesicles

(2016) Mark A. Rider et al.   Scientific Reports

Size-Exclusion Chromatography-based isolation minimally alters Extracellular Vesicles’ characteristics compared to precipitating agents

(2016) Ana Gámez-Valero et al.   Scientific Reports

Asymmetric Signal Amplification for Simultaneous SERS Detection of Multiple Cancer Markers with Significantly Different Levels

(2015) Sujuan Ye et al.   ANALYTICAL CHEMISTRY

Nanosilver-based surface-enhanced Raman spectroscopic determination of DNA methyltransferase activity through real-time hybridization chain reaction

(2015) Ping Ping Hu et al.   BIOSENSORS & BIOELECTRONICS

A dynamic surface enhanced Raman spectroscopy method for ultra-sensitive detection: from the wet state to the dry state

(2015) Liangbao Yang et al.   CHEMICAL SOCIETY REVIEWS

Live Cell MicroRNA Imaging Using Cascade Hybridization Reaction

(2015) Zoya Cheglakov et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Label-Free Surface-Enhanced Raman Spectroscopy Detection of DNA with Single-Base Sensitivity

(2015) Li-Jia Xu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Continuously tunable nucleic acid hybridization probes

(2015) Lucia R Wu et al.   NATURE METHODS

Mismatches Improve the Performance of Strand-Displacement Nucleic Acid Circuits

(2014) Yu Sherry Jiang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

On the biophysics and kinetics of toehold-mediated DNA strand displacement

(2013) Niranjan Srinivas et al.   NUCLEIC ACIDS RESEARCH

Stacking nonenzymatic circuits for high signal gain

(2013) X. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Strand displacement in DNA-based materials systems

(2013) Bryan A. Baker et al.   Soft Matter

Breathing fluctuations in position-specific DNA base pairs are involved in regulating helicase movement into the replication fork

(2012) D. Jose et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Determining the DNA stability parameters for the breathing dynamics of heterogeneous DNA by stochastic optimization

(2011) Srijeeta Talukder et al.   JOURNAL OF CHEMICAL PHYSICS

Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades

(2011) L. Qian et al.   SCIENCE

NUPACK: Analysis and design of nucleic acid systems

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Programmable in situ amplification for multiplexed imaging of mRNA expression

(2010) Harry M T Choi et al.   NATURE BIOTECHNOLOGY

A Phenomenological Model for Predicting Melting Temperatures of DNA Sequences

(2010) Garima Khandelwal et al.   PLoS One

Control of DNA Strand Displacement Kinetics Using Toehold Exchange

(2009) David Yu Zhang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Programming biomolecular self-assembly pathways

(2008) Peng Yin et al.   NATURE