Leaf shape is a predictor of fruit quality and cultivar performance in tomato

The remarkable morphological diversity of leaf shape in sweet potato ( Ipomoea batatas ): the influence of genetics, environment, and G×E

(2019) Sonal Gupta et al.   NEW PHYTOLOGIST

Rewiring of the Fruit Metabolome in Tomato Breeding

(2018) Guangtao Zhu et al.   CELL

Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions

(2018) Enrique Ostria-Gallardo et al.   NEW PHYTOLOGIST

Similar photosynthetic response to elevated carbon dioxide concentration in species with different phloem loading strategies

(2018) Kristen A. Bishop et al.   PHOTOSYNTHESIS RESEARCH

PhyloNetworks: A Package for Phylogenetic Networks

(2017) Claudia Solís-Lemus et al.   MOLECULAR BIOLOGY AND EVOLUTION

A chemical genetic roadmap to improved tomato flavor

(2017) Denise Tieman et al.   SCIENCE

Interactions between temperature and drought in global and regional crop yield variability during 1961-2014

(2017) Michael Matiu et al.   PLoS One

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels

(2015) Yongwook Choi et al.   BIOINFORMATICS

Genomic variation in tomato, from wild ancestors to contemporary breeding accessions

(2015) José Blanca et al.   BMC GENOMICS

Exploring Tree-Like and Non-Tree-Like Patterns Using Genome Sequences: An Example Using the Inbreeding Plant SpeciesArabidopsis thaliana(L.) Heynh

(2015) Noah W. M. Stenz et al.   SYSTEMATIC BIOLOGY

BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction

(2015) Brad T. Townsley et al.   Frontiers in Plant Science

Momocs: Outline Analysis UsingR

(2015) Vincent Bonhomme et al.   Journal of Statistical Software

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

(2014) Tae-Ho Lee et al.   BMC GENOMICS

Phenotyping and beyond: modelling the relationships between traits

(2014) Christine Granier et al.   CURRENT OPINION IN PLANT BIOLOGY

Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria

(2014) Albert Barberán et al.   ECOLOGY LETTERS

Genomic analyses provide insights into the history of tomato breeding

(2014) Tao Lin et al.   NATURE GENETICS

Resolving Distinct Genetic Regulators of Tomato Leaf Shape within a Heteroblastic and Ontogenetic Context

(2014) D. H. Chitwood et al.   PLANT CELL

Exploring genetic variation in the tomato (SolanumsectionLycopersicon) clade by whole-genome sequencing

(2014) et al.   PLANT JOURNAL

An update on source-to-sink carbon partitioning in tomato

(2014) Sonia Osorio et al.   Frontiers in Plant Science

Easy Leaf Area: Automated Digital Image Analysis for Rapid and Accurate Measurement of Leaf Area

(2014) Hsien Ming Easlon et al.   Applications in Plant Sciences

The history of tomato: From domestication to biopharming

(2013) Véronique Bergougnoux   BIOTECHNOLOGY ADVANCES

Source-to-sink transport of sugar and regulation by environmental factors

(2013) Remi Lemoine et al.   Frontiers in Plant Science

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Development of a Large SNP Genotyping Array and Generation of High-Density Genetic Maps in Tomato

(2012) Sung-Chur Sim et al.   PLoS One

Predicting the Functional Effect of Amino Acid Substitutions and Indels

(2012) Yongwook Choi et al.   PLoS One

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

How plant architecture affects light absorption and photosynthesis in tomato: towards an ideotype for plant architecture using a functional–structural plant model

(2011) V. Sarlikioti et al.   ANNALS OF BOTANY

Field confirmation of genetic variation in soybean transpiration response to vapor pressure deficit and photosynthetic compensation

(2011) M.E. Gilbert et al.   FIELD CROPS RESEARCH

Shoot Branching and Leaf Dissection in Tomato Are Regulated by Homologous Gene Modules

(2011) B. L. Busch et al.   PLANT CELL

Tomato Fruit Photosynthesis Is Seemingly Unimportant in Primary Metabolism and Ripening But Plays a Considerable Role in Seed Development

(2011) A. Lytovchenko et al.   PLANT PHYSIOLOGY

Leaflet initiation is temporally and spatially separated in simple and complex tomato (Solanum lycopersicum) leaf mutants: a developmental analysis

(2010) Julie Kang et al.   Botany

Genome organization of the tomatosunlocus and characterization of the unusual retrotransposonRider

(2009) Ning Jiang et al.   PLANT JOURNAL

RNA Interference of LIN5 in Tomato Confirms Its Role in Controlling Brix Content, Uncovers the Influence of Sugars on the Levels of Fruit Hormones, and Demonstrates the Importance of Sucrose Cleavage for Normal Fruit Development and Fertility

(2009) M. I. Zanor et al.   PLANT PHYSIOLOGY