Measurement of atom resolvability in cryo-EM maps with Q-scores

Water Networks Can Determine the Affinity of Ligand Binding to Proteins

(2019) John F. Darby et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

How large B-factors can be in protein crystal structures

(2018) Oliviero Carugo   BMC BIOINFORMATICS

Structural biology: Local resolution of cryo-EM maps with MonoRes

(2018)   NATURE METHODS

Real-space refinement in PHENIX for cryo-EM and crystallography

(2018) Pavel V. Afonine et al.   Acta Crystallographica Section D-Structural Biology

New software tools in EMAN2 inspired by EMDatabank map challenge

(2018) James M. Bell et al.   JOURNAL OF STRUCTURAL BIOLOGY

Assessment of structural features in Cryo-EM density maps using SSE and side chain Z-scores

(2018) Grigore Pintilie et al.   JOURNAL OF STRUCTURAL BIOLOGY

Challenges for cryo-EM

(2018)   NATURE METHODS

A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps

(2018) Thomas C. Terwilliger et al.   NATURE METHODS

New tools for automated high-resolution cryo-EM structure determination in RELION-3

(2018) Jasenko Zivanov et al.   eLife

Estimating Electron Density Support for Individual Atoms and Molecular Fragments in X-ray Structures

(2017) Agnes Meyder et al.   Journal of Chemical Information and Modeling

Improved metrics for comparing structures of macromolecular assemblies determined by 3D electron-microscopy

(2017) Agnel Praveen Joseph et al.   JOURNAL OF STRUCTURAL BIOLOGY

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

(2017) Shawn Q Zheng et al.   NATURE METHODS

Accurate model annotation of a near-atomic resolution cryo-EM map

(2017) Corey F. Hryc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs

(2017) J. Bernard Heymann   PROTEIN SCIENCE

Resolution and Probabilistic Models of Components in CryoEM Maps of Mature P22 Bacteriophage

(2016) Grigore Pintilie et al.   BIOPHYSICAL JOURNAL

Refinement of atomic models in high resolution EM reconstructions using Flex-EM and local assessment

(2016) Agnel Praveen Joseph et al.   METHODS

Molecular dynamics-based refinement and validation for sub-5 Å cryo-electron microscopy maps

(2016) Abhishek Singharoy et al.   eLife

EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy

(2015) Benjamin A Barad et al.   NATURE METHODS

Quantifying the local resolution of cryo-EM density maps

(2013) Alp Kucukelbir et al.   NATURE METHODS

Cryo-EM model validation using independent map reconstructions

(2013) Frank DiMaio et al.   PROTEIN SCIENCE

Comparison of Segger and other methods for segmentation and rigid-body docking of molecular components in Cryo-EM density maps

(2012) Grigore Pintilie et al.   BIOPOLYMERS

Applications of the molecular dynamics flexible fitting method

(2010) Leonardo G. Trabuco et al.   JOURNAL OF STRUCTURAL BIOLOGY

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Refinement of Protein Structures into Low-Resolution Density Maps Using Rosetta

(2009) Frank DiMaio et al.   JOURNAL OF MOLECULAR BIOLOGY

A beginner's guide to radiation damage

(2009) James M. Holton   JOURNAL OF SYNCHROTRON RADIATION

Molecular dynamics flexible fitting: A practical guide to combine cryo-electron microscopy and X-ray crystallography

(2009) Leonardo G. Trabuco et al.   METHODS