Chromosome‐level assembly of wild Bactrian camel genome reveals organization of immune gene loci

The major histocompatibility complex of Old World camelids: Class I and class I‐related genes

(2019) Martin Plasil et al.   HLA

Improving Illumina assemblies with Hi‐C and long reads: An example with the North African dromedary

(2019) Jean P. Elbers et al.   Molecular Ecology Resources

Comparative Analysis of the TRB Locus in the Camelus Genus

(2019) Rachele Antonacci et al.   Frontiers in Genetics

Natural Killer Cell Receptor Genes in Camels: Another Mammalian Model

(2019) Jan Futas et al.   Frontiers in Genetics

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

Nanopore sequencing and assembly of a human genome with ultra-long reads

(2018) Miten Jain et al.   NATURE BIOTECHNOLOGY

Accurate detection of complex structural variations using single-molecule sequencing

(2018) Fritz J. Sedlazeck et al.   NATURE METHODS

Single molecule real-time (SMRT) sequencing comes of age: applications and utilities for medical diagnostics

(2018) Simon Ardui et al.   NUCLEIC ACIDS RESEARCH

D-GENIES: dot plot large genomes in an interactive, efficient and simple way

(2018) Floréal Cabanettes et al.   PeerJ

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

(2017) Derek M Bickhart et al.   NATURE GENETICS

The major histocompatibility complex in Old World camelids and low polymorphism of its class II genes

(2016) Martin Plasil et al.   BMC GENOMICS

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

(2016) Evgeny M. Zdobnov et al.   NUCLEIC ACIDS RESEARCH

Long-read sequence assembly of the gorilla genome

(2016) D. Gordon et al.   SCIENCE

The history of Old World camelids in the light of molecular genetics

(2016) Pamela Anna Burger   TROPICAL ANIMAL HEALTH AND PRODUCTION

Sheep (Ovis aries) T cell receptor alpha (TRA) and delta (TRD) genes and genomic organization of the TRA/TRD locus

(2015) Barbara Piccinni et al.   BMC GENOMICS

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

Molecular analysis of heavy chain-only antibodies of Camelus bactrianus

(2014) S. V. Tillib et al.   BIOCHEMISTRY-MOSCOW

Genomic analysis offers insights into the evolution of the bovine TRA/TRD locus

(2014) Timothy K Connelley et al.   BMC GENOMICS

Characteristics of the somatic hypermutation in the Camelus dromedarius T cell receptor gamma (TRG) and delta (TRD) variable domains

(2014) Salvatrice Ciccarese et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Analysis of heavy and light chain sequences of conventional camelid antibodies from Camelus dromedarius and Camelus bactrianus species

(2014) Laura M. Griffin et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Tetrameric and Homodimeric Camelid IgGs Originate from the Same IgH Locus

(2014) I. Achour et al.   JOURNAL OF IMMUNOLOGY

IMGT®, the international ImMunoGeneTics information system® 25 years on

(2014) Marie-Paule Lefranc et al.   NUCLEIC ACIDS RESEARCH

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Camelid genomes reveal evolution and adaptation to desert environments

(2014) Huiguang Wu et al.   Nature Communications

Nanobodies: Natural Single-Domain Antibodies

(2013) Serge Muyldermans   Annual Review of Biochemistry

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

(2013) Joshua N Burton et al.   NATURE BIOTECHNOLOGY

IgBLAST: an immunoglobulin variable domain sequence analysis tool

(2013) Jian Ye et al.   NUCLEIC ACIDS RESEARCH

Generation of diversity by somatic mutation in theCamelus dromedariusT-cell receptor gamma variable domains

(2012) Giovanna Vaccarelli et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Reevaluating Assembly Evaluations with Feature Response Curves: GAGE and Assemblathons

(2012) Francesco Vezzi et al.   PLoS One

Genome sequences of wild and domestic bactrian camels

(2012)   Nature Communications

Expression and genomic analyses of Camelus dromedarius T cell receptor delta (TRD) genes reveal a variable domain repertoire enlargement due to CDR3 diversification and somatic mutation

(2011) Rachele Antonacci et al.   MOLECULAR IMMUNOLOGY

RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes

(2010) I. Merelli et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

genBlastA: Enabling BLAST to identify homologous gene sequences

(2008) R. She et al.   GENOME RESEARCH