Genomic and phenotypic effects of inbreeding across two different hatchery management regimes in Chinook salmon

Genomewide association analyses of fitness traits in captive-reared Chinook salmon: Applications in evaluating conservation strategies

(2018) Charles D. Waters et al.   Evolutionary Applications

Intrinsic differences between males and females determine sex-specific consequences of inbreeding

(2016) Emily R. Ebel et al.   BMC EVOLUTIONARY BIOLOGY

Genomics advances the study of inbreeding depression in the wild

(2016) Marty Kardos et al.   Evolutionary Applications

It’s a bear market: evolutionary and ecological effects of predation on two wild sockeye salmon populations

(2016) J E Lin et al.   HEREDITY

Biological Impacts of the 2013–2015 Warm-Water Anomaly in the Northeast Pacific: Winners, Losers, and the Future

(2016) Leticia Cavole et al.   OCEANOGRAPHY

Inbreeding depression across the lifespan in a wild mammal population

(2016) Jisca Huisman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Five myths about variable selection

(2016) Georg Heinze et al.   TRANSPLANT INTERNATIONAL

Understanding Inbreeding Depression, Purging, and Genetic Rescue

(2016) Philip W. Hedrick et al.   TRENDS IN ECOLOGY & EVOLUTION

Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds

(2015) Qianqian Zhang et al.   BMC GENETICS

Factors influencing spawner success in a spring Chinook salmon (Oncorhynchus tshawytscha) reintroduction program

(2015) Nicholas M. Sard et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Valid estimates of individual inbreeding coefficients from marker-based pedigrees are not feasible in wild populations with low allelic diversity

(2015) Helen R. Taylor et al.   CONSERVATION GENETICS

Effectiveness of managed gene flow in reducing genetic divergence associated with captive breeding

(2015) Charles D. Waters et al.   Evolutionary Applications

Using genome-wide measures of coancestry to maintain diversity and fitness in endangered and domestic pig populations

(2015) Mirte Bosse et al.   GENOME RESEARCH

Measuring individual inbreeding in the age of genomics: marker-based measures are better than pedigrees

(2015) M Kardos et al.   HEREDITY

A Synthesis of Findings from an Integrated Hatchery Program after Three Generations of Spawning in the Natural Environment

(2015) David E. Fast et al.   NORTH AMERICAN JOURNAL OF AQUACULTURE

The use and abuse of genetic marker-based estimates of relatedness and inbreeding

(2015) Helen R. Taylor   Ecology and Evolution

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Inbreeding and runs of homozygosity: A possible solution to an old problem

(2014) Ino Curik et al.   Livestock Science

The impacts of inbreeding, drift and selection on genetic diversity in captive breeding populations

(2014) Janna R. Willoughby et al.   MOLECULAR ECOLOGY

High-throughput sequencing reveals inbreeding depression in a natural population

(2014) J. I. Hoffman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PEDIGREE ERROR DUE TO EXTRA-PAIR REPRODUCTION SUBSTANTIALLY BIASES ESTIMATES OF INBREEDING DEPRESSION

(2013) Jane M. Reid et al.   EVOLUTION

How Much Does Inbreeding Contribute to the Reduced Fitness of Hatchery-Born Steelhead (Oncorhynchus mykiss) in the Wild?

(2013) M. R. Christie et al.   JOURNAL OF HEREDITY

Effects of genetic management on reproduction, growth, and survival in captive endangered pygmy rabbits (Brachylagus idahoensis)

(2013) Becky A. Elias et al.   JOURNAL OF MAMMALOGY

Relationship between effective population size, inbreeding and adult fitness-related traits in a steelhead (Oncorhynchus mykiss) population released in the wild

(2013) K. A. Naish et al.   MOLECULAR ECOLOGY

A comparison of pedigree- and DNA-based measures for identifying inbreeding depression in the critically endangered Attwater's Prairie-chicken

(2013) Susan C. Hammerly et al.   MOLECULAR ECOLOGY

Temporal variation in selection on body length and date of return in a wild population of coho salmon, Oncorhynchus kisutch

(2012) Miyako Kodama et al.   BMC EVOLUTIONARY BIOLOGY

Evaluating Alternative Strategies for Minimizing Unintended Fitness Consequences of Cultured Individuals on Wild Populations

(2012) MARISSA L. BASKETT et al.   CONSERVATION BIOLOGY

Reproductive success of captively bred and naturally spawned Chinook salmon colonizing newly accessible habitat

(2012) Joseph H. Anderson et al.   Evolutionary Applications

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Hatcheries, Conservation, and Sustainable Fisheries—Achieving Multiple Goals: Results of the Hatchery Scientific Review Group's Columbia River Basin Review

(2011) P. J. Paquet et al.   FISHERIES

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genotype by environment interactions for growth in European seabass (Dicentrarchus labrax) are large when growth rate rather than weight is considered

(2010) Mathilde Dupont-Nivet et al.   AQUACULTURE

Factors influencing the relative fitness of hatchery and wild spring Chinook salmon (Oncorhynchus tshawytscha) in the Wenatchee River, Washington, USA

(2010) Kevin S. Williamson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Inbreeding Depression Accumulation across Life-History Stages of the Endangered Takahe

(2010) CATHERINE E. GRUEBER et al.   CONSERVATION BIOLOGY

Selection on breeding date and body size in colonizing coho salmon, Oncorhynchus kisutch

(2010) J. H. ANDERSON et al.   MOLECULAR ECOLOGY

On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs

(2010) ANNA W. SANTURE et al.   MOLECULAR ECOLOGY

coancestry: a program for simulating, estimating and analysing relatedness and inbreeding coefficients

(2010) JINLIANG WANG   Molecular Ecology Resources

Sensitive males: inbreeding depression in an endangered bird

(2010) P. Brekke et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Recent Captive-Breeding Proposals and the Return of the Ark Concept to Global Species Conservation

(2009) ANDREW E. BOWKETT   CONSERVATION BIOLOGY

A genetic analysis of recapture frequencies of released young of salmon (Salmo salar L.)

(2009) Nils Ryman   HEREDITAS

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

Estimates of Natural Selection in a Salmon Population in Captive and Natural Environments

(2008) MICHAEL J. FORD et al.   CONSERVATION BIOLOGY

Effects of a single event of close inbreeding on growth and survival in steelhead

(2008) Frank P. Thrower et al.   CONSERVATION GENETICS

How well can captive breeding programs conserve biodiversity? A review of salmonids

(2008) Dylan J. Fraser   Evolutionary Applications

Comparison of Female Reproductive Traits and Progeny of First-Generation Hatchery and Wild Upper Yakima River Spring Chinook Salmon

(2008) Curtis M. Knudsen et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY