Are glacial refugia hotspots of speciation and cytonuclear discordances? Answers from the genomic phylogeography of Spanish common frogs

Integrating hybrid zone analyses in species delimitation: lessons from two anuran radiations of the Western Mediterranean

(2020) Christophe Dufresnes et al.   HEREDITY

Mapping of quantitative trait loci for life history traits segregating within common frog populations

(2019) Gemma Palomar et al.   HEREDITY

Complementing the Pleistocene biogeography of European amphibians: Testimony from a southern Atlantic species

(2019) Gregorio Sánchez-Montes et al.   JOURNAL OF BIOGEOGRAPHY

Extending phylogeography to account for lineage fusion

(2019) Ryan C. Garrick et al.   JOURNAL OF BIOGEOGRAPHY

Extreme mito-nuclear discordance in a peninsular lizard: the role of drift, selection, and climate

(2019) Pedro Henrique Bernardo et al.   HEREDITY

Historical hybrid zone movement: More pervasive than appreciated

(2019) Ben Wielstra   JOURNAL OF BIOGEOGRAPHY

Reconstructing evolution at the community level: A case study on Mediterranean amphibians

(2019) Sarah Ehl et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A mirage of cryptic species: Genomics uncover striking mitonuclear discordance in the butterfly Thymelicus sylvestris

(2019) Joan C. Hinojosa et al.   MOLECULAR ECOLOGY

Phylogeography of a cryptic speciation continuum in Eurasian spadefoot toads (Pelobates )

(2019) Christophe Dufresnes et al.   MOLECULAR ECOLOGY

Modelling Ranavirus Transmission in Populations of Common Frogs (Rana temporaria) in the United Kingdom

(2019) Amanda L.J. Duffus et al.   Viruses-Basel

Population genomics of an exceptional hybridogenetic system of Pelophylax water frogs

(2019) Sylvain Dubey et al.   BMC EVOLUTIONARY BIOLOGY

Fifteen shades of green: The evolution of Bufotes toads revisited

(2019) Christophe Dufresnes et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The roles of allopatric fragmentation and niche divergence in intraspecific lineage diversification in the common midwife toad (Alytes obstetricans )

(2018) Bruno Maia-Carvalho et al.   JOURNAL OF BIOGEOGRAPHY

Sex-Chromosome Recombination in Common Frogs Brings Water to the Fountain-of-Youth

(2018) Nicolas Rodrigues et al.   MOLECULAR BIOLOGY AND EVOLUTION

Finding Evolutionary Processes Hidden in Cryptic Species

(2018) Torsten H. Struck et al.   TRENDS IN ECOLOGY & EVOLUTION

A reassessment of explanations for discordant introgressions of mitochondrial and nuclear genomes

(2017) Timothée Bonnet et al.   EVOLUTION

SMS: Smart Model Selection in PhyML

(2017) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Range instability leads to cytonuclear discordance in a morphologically cryptic ground squirrel species complex

(2017) Mark A. Phuong et al.   MOLECULAR ECOLOGY

Assessing the potential of RAD-sequencing to resolve phylogenetic relationships within species radiations: The fly genus Chiastocheta (Diptera: Anthomyiidae) as a case study

(2017) Tomasz Suchan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Integrative inference of population history in the Ibero-Maghrebian endemic Pleurodeles waltl (Salamandridae)

(2017) Jorge Gutiérrez-Rodríguez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Integration of molecular, bioacoustical and morphological data reveals two new cryptic species of Pelodytes (Anura, Pelodytidae) from the Iberian Peninsula

(2017) JESÚS DÍAZ-RODRÍGUEZ et al.   ZOOTAXA

Explaining large mitochondrial sequence differences within a population sample

(2017) Mary Morgan-Richards et al.   Royal Society Open Science

The genetic contribution to sex determination and number of sex chromosomes vary among populations of common frogs (Rana temporaria)

(2016) N Rodrigues et al.   HEREDITY

Testing the climate variability hypothesis in thermal tolerance limits of tropical and temperate tadpoles

(2016) L. M. Gutiérrez-Pesquera et al.   JOURNAL OF BIOGEOGRAPHY

Present and past climatic effects on the current distribution and genetic diversity of the Iberian spadefoot toad (Pelobates cultripes ): an integrative approach

(2016) Jorge Gutiérrez-Rodríguez et al.   JOURNAL OF BIOGEOGRAPHY

Evolutionary melting pots: a biodiversity hotspot shaped by ring diversifications around the Black Sea in the Eastern tree frog (Hyla orientalis )

(2016) Christophe Dufresnes et al.   MOLECULAR ECOLOGY

Identifying homomorphic sex chromosomes from wild-caught adults with limited genomic resources

(2016) Alan Brelsford et al.   Molecular Ecology Resources

Spatiotemporal Diversification of the True Frogs (GenusRana): A Historical Framework for a Widely Studied Group of Model Organisms

(2016) Zhi-Yong Yuan et al.   SYSTEMATIC BIOLOGY

A review of the palaeoclimatic inference potential of Iberian Quaternary fossil batrachians

(2016) Jorge M. Lobo et al.   Palaeobiodiversity and Palaeoenvironments

Timeframe of speciation inferred from secondary contact zones in the European tree frog radiation (Hyla arborea group)

(2015) Christophe Dufresnes et al.   BMC EVOLUTIONARY BIOLOGY

High-density sex-specific linkage maps of a European tree frog (Hyla arborea) identify the sex chromosome without information on offspring sex

(2015) A Brelsford et al.   HEREDITY

Evolutionary history of Ichthyosaura alpestris (Caudata, Salamandridae) inferred from the combined analysis of nuclear and mitochondrial markers

(2014) Ernesto Recuero et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Species Delimitation using Genome-Wide SNP Data

(2014) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

What triggers the rising of an intraspecific biodiversity hotspot? Hints from the agile frog

(2014) Daniele Canestrelli et al.   Scientific Reports

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

PERCHED AT THE MITO-NUCLEAR CROSSROADS: DIVERGENT MITOCHONDRIAL LINEAGES CORRELATE WITH ENVIRONMENT IN THE FACE OF ONGOING NUCLEAR GENE FLOW IN AN AUSTRALIAN BIRD

(2013) Alexandra Pavlova et al.   EVOLUTION

How to describe a cryptic species? Practical challenges of molecular taxonomy

(2013) Katharina M Jörger et al.   Frontiers in Zoology

Multilocus phylogeography (mitochondrial, autosomal and Z-chromosomal loci) and genetic consequence of long-distance male dispersal in Black-throated tits (Aegithalos concinnus)

(2013) C Dai et al.   HEREDITY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Local adaptation with high gene flow: temperature parameters drive adaptation to altitude in the common frog (Rana temporaria)

(2013) A. P. Muir et al.   MOLECULAR ECOLOGY

hzar: hybrid zone analysis using an R software package

(2013) Elizabeth P. Derryberry et al.   Molecular Ecology Resources

Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana

(2013) Miguel Vences et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Confounding Effect of Population Structure on Bayesian Skyline Plot Inferences of Demographic History

(2013) Rasmus Heller et al.   PLoS One

Genomic Evidence for Island Population Conversion Resolves Conflicting Theories of Polar Bear Evolution

(2013) James A. Cahill et al.   PLoS Genetics

A critical review on the utility of DNA barcoding in biodiversity conservation

(2012) P. Krishna Krishnamurthy et al.   BIODIVERSITY AND CONSERVATION

Extra-Mediterranean refugia: The rule and not the exception?

(2012) Thomas Schmitt et al.   Frontiers in Zoology

Discordant Patterns of Nuclear and Mitochondrial Introgression in Iberian Populations of the European Common Frog (Rana temporaria)

(2012) Michael Veith et al.   JOURNAL OF HEREDITY

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

Evolutionary history of Lissotriton helveticus: Multilocus assessment of ancestral vs. recent colonization of the Iberian Peninsula

(2011) Ernesto Recuero et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Low mitochondrial divergence of rediscovered southern relict populations of Rana temporaria parvipalmata in Spain

(2010) Pedro Galán et al.   AMPHIBIA-REPTILIA

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

ENMTools: a toolbox for comparative studies of environmental niche models

(2010) Dan L. Warren et al.   ECOGRAPHY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Genetic Consequences of Range Expansions

(2009) Laurent Excoffier et al.   Annual Review of Ecology Evolution and Systematics

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Refugia revisited: individualistic responses of species in space and time

(2009) J. R. Stewart et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Bayesian inference of population size history from multiple loci

(2008) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation

(2008) Steven J. Phillips et al.   ECOGRAPHY

THE HIDDEN SIDE OF INVASIONS: MASSIVE INTROGRESSION BY LOCAL GENES

(2008) Mathias Currat et al.   EVOLUTION

Mitochondrial DNA under siege in avian phylogeography

(2008) ROBERT M. ZINK et al.   MOLECULAR ECOLOGY

Developmental responses to UV-B radiation in common frog Rana temporaria embryos from along an altitudinal gradient

(2008) Olivier Marquis et al.   POPULATION ECOLOGY

Phylogeographic insights into cryptic glacial refugia

(2008) J PROVAN et al.   TRENDS IN ECOLOGY & EVOLUTION