Integrating hybrid zone analyses in species delimitation: lessons from two anuran radiations of the Western Mediterranean

Extending phylogeography to account for lineage fusion

(2019) Ryan C. Garrick et al.   JOURNAL OF BIOGEOGRAPHY

Extreme mito-nuclear discordance in a peninsular lizard: the role of drift, selection, and climate

(2019) Pedro Henrique Bernardo et al.   HEREDITY

Reconstructing evolution at the community level: A case study on Mediterranean amphibians

(2019) Sarah Ehl et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenomics of the adaptive radiation of Triturus newts supports gradual ecological niche expansion towards an incrementally aquatic lifestyle

(2019) B. Wielstra et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A river runs through it: tree frog genomics supports the Dead Sea Rift as a rare phylogeographical break

(2019) Christophe Dufresnes et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Phylogeography of a cryptic speciation continuum in Eurasian spadefoot toads (Pelobates )

(2019) Christophe Dufresnes et al.   MOLECULAR ECOLOGY

Patterns, Mechanisms and Genetics of Speciation in Reptiles and Amphibians

(2019) Wollenberg Valero et al.   Genes

Model-based species delimitation: are coalescent species reproductively isolated?

(2019) Luke C Campillo et al.   SYSTEMATIC BIOLOGY

Fifteen shades of green: The evolution of Bufotes toads revisited

(2019) Christophe Dufresnes et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Coupling, Reinforcement, and Speciation

(2018) Roger K. Butlin et al.   AMERICAN NATURALIST

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cryptic species as a window into the paradigm shift of the species concept

(2018) Cene Fišer et al.   MOLECULAR ECOLOGY

Recent Advances in Detecting Mitochondrial DNA Heteroplasmic Variations

(2018) et al.   MOLECULES

Comparative phylogeography of amphibians and reptiles in Algeria suggests common causes for the east-west phylogeographic breaks in the Maghreb

(2018) Menad Beddek et al.   PLoS One

A reassessment of explanations for discordant introgressions of mitochondrial and nuclear genomes

(2017) Timothée Bonnet et al.   EVOLUTION

New Evidences of Mitochondrial DNA Heteroplasmy by Putative Paternal Leakage between the Rock Partridge (Alectoris graeca) and the Chukar Partridge (Alectoris chukar)

(2017) Andrea Gandolfi et al.   PLoS One

Multispecies coalescent delimits structure, not species

(2017) Jeet Sukumaran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integration of molecular, bioacoustical and morphological data reveals two new cryptic species of Pelodytes (Anura, Pelodytidae) from the Iberian Peninsula

(2017) JESÚS DÍAZ-RODRÍGUEZ et al.   ZOOTAXA

Why are some species older than others? A large-scale study of vertebrates

(2016) Laure Cattin et al.   BMC EVOLUTIONARY BIOLOGY

A new vertebrate for Europe: the discovery of a range-restricted relict viper in the western Italian Alps

(2016) Samuele Ghielmi et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

On the origin of the recent herpetofauna of Sicily: Comparative phylogeography using homologous mitochondrial and nuclear genes

(2016) Matthias Stöck et al.   ZOOLOGISCHER ANZEIGER

Freshwater vertebrate metabarcoding on Illumina platforms using double-indexed primers of the mitochondrial 16S rRNA gene

(2016) Miguel Vences et al.   Conservation Genetics Resources

Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence

(2016) Camille Roux et al.   PLOS BIOLOGY

High-density sex-specific linkage maps of a European tree frog (Hyla arborea) identify the sex chromosome without information on offspring sex

(2015) A Brelsford et al.   HEREDITY

Tree of Life Reveals Clock-Like Speciation and Diversification

(2015) S. Blair Hedges et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular evidence for cryptic candidate species in Iberian Pelodytes (Anura, Pelodytidae)

(2015) Jesús Díaz-Rodríguez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

New insights on phylogeography and distribution of painted frogs (Discoglossus) in northern Africa and the Iberian Peninsula

(2014) Miguel Vences et al.   AMPHIBIA-REPTILIA

Hybridization, Introgression, and the Nature of Species Boundaries

(2014) Richard G. Harrison et al.   JOURNAL OF HEREDITY

Global Biodiversity Assessment and Hyper-Cryptic Species Complexes: More Than One Species of Elephant in the Room?

(2014) Mark Adams et al.   SYSTEMATIC BIOLOGY

Species Delimitation using Genome-Wide SNP Data

(2014) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

hzar: hybrid zone analysis using an R software package

(2013) Elizabeth P. Derryberry et al.   Molecular Ecology Resources

Reproductive isolation between phylogeographic lineages scales with divergence

(2013) S. Singhal et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Species Delimitation Using Bayes Factors: Simulations and Application to the Sceloporus scalaris Species Group (Squamata: Phrynosomatidae)

(2013) Jared A. Grummer et al.   SYSTEMATIC BIOLOGY

Review of the systematics, distribution, biogeography and natural history of Moroccan amphibians

(2013) WOUTER BEUKEMA et al.   ZOOTAXA

The origin of modern frogs (Neobatrachia) was accompanied by acceleration in mitochondrial and nuclear substitution rates

(2012) Iker Irisarri et al.   BMC GENOMICS

Goldilocks Meets Santa Rosalia: An Ephemeral Speciation Model Explains Patterns of Diversification Across Time Scales

(2012) Erica Bree Rosenblum et al.   Evolutionary Biology

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

A multigene species tree for Western Mediterranean painted frogs (Discoglossus)

(2012) Maciej Pabijan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

The integrative future of taxonomy

(2010) Jose M. Padial et al.   Frontiers in Zoology

Hybrid Incompatibility "Snowballs" Between Solanum Species

(2010) L. C. Moyle et al.   SCIENCE

A Test of the Snowball Theory for the Rate of Evolution of Hybrid Incompatibilities

(2010) D. R. Matute et al.   SCIENCE

Molecular Poltergeists: Mitochondrial DNA Copies (numts) in Sequenced Nuclear Genomes

(2010) Einat Hazkani-Covo et al.   PLoS Genetics

ARE SPECIES REAL? THE SHAPE OF THE SPECIES BOUNDARY WITH EXPONENTIAL FAILURE, REINFORCEMENT, AND THE “MISSING SNOWBALL”

(2009) Sébastien Gourbière et al.   EVOLUTION

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Coalescent methods for estimating phylogenetic trees

(2009) Liang Liu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Vast underestimation of Madagascar's biodiversity evidenced by an integrative amphibian inventory

(2009) D. R. Vieites et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

(2008) Scott V. Edwards   EVOLUTION

Mitochondrial DNA under siege in avian phylogeography

(2008) ROBERT M. ZINK et al.   MOLECULAR ECOLOGY

False phylogenies on wood mice due to cryptic cytochrome-b pseudogene

(2008) Sylvain Dubey et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Patterns of Reproductive Isolation in Toads

(2008) John H. Malone et al.   PLoS One