Genomes and Transcriptomes of Partners in Plant-Fungal- Interactions between Canola (Brassica napus) and Two Leptosphaeria Species

The LmSNF1 Gene Is Required for Pathogenicity in the Canola Blackleg Pathogen Leptosphaeria maculans

(2014) Jie Feng et al.   PLoS One

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

(2013) Anthony Levasseur et al.   Biotechnology for Biofuels

Coevolution and Life Cycle Specialization of Plant Cell Wall Degrading Enzymes in a Hemibiotrophic Pathogen

(2013) Patrick C. Brunner et al.   MOLECULAR BIOLOGY AND EVOLUTION

An avirulence gene,AvrLmJ1, from the blackleg fungus,Leptosphaeria maculans, confers avirulence toBrassica junceacultivars

(2013) Angela P. Van de Wouw et al.   MOLECULAR PLANT PATHOLOGY

The dispensable chromosome ofLeptosphaeria maculansshelters an effector gene conferring avirulence towardsBrassica rapa

(2013) Marie-Hélène Balesdent et al.   NEW PHYTOLOGIST

Simultaneous Transcriptome Analysis of Sorghum and Bipolaris sorghicola by Using RNA-seq in Combination with De Novo Transcriptome Assembly

(2013) Takayuki Yazawa et al.   PLoS One

Redisposition of phoma-like anamorphs in Pleosporales

(2013) J. de Gruyter et al.   STUDIES IN MYCOLOGY

Recognition of Avirulence Gene AvrLm1 from Hemibiotrophic Ascomycete Leptosphaeria maculans Triggers Salicylic Acid and Ethylene Signaling in Brassica napus

(2012) Vladimír Šašek et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

TheBrassica napusblackleg resistance geneLepR3encodes a receptor-like protein triggered by theLeptosphaeria maculanseffector AVRLM1

(2012) N. J. Larkan et al.   NEW PHYTOLOGIST

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Simultaneous RNA-Seq Analysis of a Mixed Transcriptome of Rice and Blast Fungus Interaction

(2012) Yoshihiro Kawahara et al.   PLoS One

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

(2012) Robin A. Ohm et al.   PLoS Pathogens

Transcriptome analysis of Stagonospora nodorum: gene models, effectors, metabolism and pantothenate dispensability

(2011) SIMON V. S. IPCHO et al.   MOLECULAR PLANT PATHOLOGY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

(2011) N. D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

(2011) S. Duplessis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

(2011) Thierry Rouxel et al.   Nature Communications

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

New developments in pathogenicity and virulence of necrotrophs

(2010) Richard P Oliver et al.   CURRENT OPINION IN PLANT BIOLOGY

Pyrenophora teres: profile of an increasingly damaging barley pathogen

(2010) ZHAOHUI LIU et al.   MOLECULAR PLANT PATHOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

A Bioinformatics Approach to the Identification, Classification, and Analysis of Hydroxyproline-Rich Glycoproteins

(2010) A. M. Showalter et al.   PLANT PHYSIOLOGY

A Brassica Exon Array for Whole-Transcript Gene Expression Profiling

(2010) Christopher G. Love et al.   PLoS One

Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome

(2010) L. Baxter et al.   SCIENCE

Conserved Fungal LysM Effector Ecp6 Prevents Chitin-Triggered Immunity in Plants

(2010) R. de Jonge et al.   SCIENCE

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

(2010) P. D. Spanu et al.   SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Layers of defense responses to Leptosphaeria maculans below the RLM1 - and camalexin-dependent resistances

(2009) Mattias Persson et al.   NEW PHYTOLOGIST

Leptosphaeria maculansavirulence geneAvrLm4-7confers a dual recognition specificity by theRlm4andRlm7resistance genes of oilseed rape, and circumventsRlm4-mediated recognition through a single amino acid change

(2008) Francis Parlange et al.   MOLECULAR MICROBIOLOGY

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH