A comparison of gene expression and DNA methylation patterns across tissues and species
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A comparison of gene expression and DNA methylation patterns across tissues and species
Authors
Keywords
-
Journal
GENOME RESEARCH
Volume 30, Issue 2, Pages 250-262
Publisher
Cold Spring Harbor Laboratory
Online
2020-01-18
DOI
10.1101/gr.254904.119
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A quantitative framework for characterizing the evolutionary history of mammalian gene expression
- (2018) Jenny Chen et al. GENOME RESEARCH
- Genetic effects on gene expression across human tissues
- (2017) François Aguet et al. NATURE
- The human protein atlas: A spatial map of the human proteome
- (2017) Peter J. Thul et al. PROTEIN SCIENCE
- Brain gene expression signature on primate genomic sequence evolution
- (2017) Shahar Barbash et al. Scientific Reports
- Variance adaptive shrinkage (vash): flexible empirical Bayes estimation of variances
- (2016) Mengyin Lu et al. BIOINFORMATICS
- False discovery rates: a new deal
- (2016) Matthew Stephens BIOSTATISTICS
- The Human Protein Atlas – an important resource for basic and clinical research
- (2016) Cecilia Lindskog Expert Review of Proteomics
- Enhancer Evolution across 20 Mammalian Species
- (2015) Diego Villar et al. CELL
- Transcription factor binding dynamics during human ES cell differentiation
- (2015) Alexander M. Tsankov et al. NATURE
- The interplay between DNA methylation and sequence divergence in recent human evolution
- (2015) Irene Hernando-Herraez et al. NUCLEIC ACIDS RESEARCH
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium
- (2015) Nancy Yiu-Lin Yu et al. NUCLEIC ACIDS RESEARCH
- Tissue-based map of the human proteome
- (2015) M. Uhlen et al. SCIENCE
- Sharing and Specificity of Co-expression Networks across 35 Human Tissues
- (2015) Emma Pierson et al. PLoS Computational Biology
- DNA Methylation: Insights into Human Evolution
- (2015) Irene Hernando-Herraez et al. PLoS Genetics
- A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics
- (2015) Irene Gallego Romero et al. eLife
- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- Conservation of trans-acting circuitry during mammalian regulatory evolution
- (2014) Andrew B. Stergachis et al. NATURE
- Comparison of the transcriptional landscapes between human and mouse tissues
- (2014) Shin Lin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels
- (2014) Nicholas E. Banovich et al. PLoS Genetics
- voom: precision weights unlock linear model analysis tools for RNA-seq read counts
- (2014) Charity W Law et al. GENOME BIOLOGY
- Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization
- (2013) K. D. Hansen et al. GENOME RESEARCH
- The UCSC Genome Browser database: 2014 update
- (2013) Donna Karolchik et al. NUCLEIC ACIDS RESEARCH
- Many human accelerated regions are developmental enhancers
- (2013) J. A. Capra et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures
- (2013) Z. Khan et al. SCIENCE
- Dynamics of DNA Methylation in Recent Human and Great Ape Evolution
- (2013) Irene Hernando-Herraez et al. PLoS Genetics
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Latent Regulatory Potential of Human-Specific Repetitive Elements
- (2012) Michelle C. Ward et al. MOLECULAR CELL
- Comparative studies of gene expression and the evolution of gene regulation
- (2012) Irene Gallego Romero et al. NATURE REVIEWS GENETICS
- A Selection Index for Gene Expression Evolution and Its Application to the Divergence between Humans and Chimpanzees
- (2012) Maria Warnefors et al. PLoS One
- Social environment is associated with gene regulatory variation in the rhesus macaque immune system
- (2012) J. Tung et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues
- (2012) J. Merkin et al. SCIENCE
- The Evolutionary Landscape of Alternative Splicing in Vertebrate Species
- (2012) N. L. Barbosa-Morais et al. SCIENCE
- Extensive Evolutionary Changes in Regulatory Element Activity during Human Origins Are Associated with Altered Gene Expression and Positive Selection
- (2012) Yoichiro Shibata et al. PLoS Genetics
- BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
- (2012) Kasper D Hansen et al. GENOME BIOLOGY
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- Sperm Methylation Profiles Reveal Features of Epigenetic Inheritance and Evolution in Primates
- (2011) Antoine Molaro et al. CELL
- Gene Expression Differences Among Primates Are Associated With Changes in a Histone Epigenetic Modification
- (2011) C. E. Cain et al. GENETICS
- Phyloepigenomic comparison of great apes reveals a correlation between somatic and germline methylation states
- (2011) D. I. K. Martin et al. GENOME RESEARCH
- DNA methylation profiles of human active and inactive X chromosomes
- (2011) A. J. Sharp et al. GENOME RESEARCH
- The evolution of gene expression levels in mammalian organs
- (2011) David Brawand et al. NATURE
- Increased methylation variation in epigenetic domains across cancer types
- (2011) Kasper Daniel Hansen et al. NATURE GENETICS
- Needles in stacks of needles: finding disease-causal variants in a wealth of genomic data
- (2011) Gregory M. Cooper et al. NATURE REVIEWS GENETICS
- REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
- (2011) Fran Supek et al. PLoS One
- A Genome-Wide Study of DNA Methylation Patterns and Gene Expression Levels in Multiple Human and Chimpanzee Tissues
- (2011) Athma A. Pai et al. PLoS Genetics
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Both Noncoding and Protein-Coding RNAs Contribute to Gene Expression Evolution in the Primate Brain
- (2010) Courtney C. Babbitt et al. Genome Biology and Evolution
- Sex-specific and lineage-specific alternative splicing in primates
- (2009) R. Blekhman et al. GENOME RESEARCH
- Human DNA methylomes at base resolution show widespread epigenomic differences
- (2009) Ryan Lister et al. NATURE
- Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain
- (2009) Katja Nowick et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A comprehensive functional analysis of tissue specificity of human gene expression
- (2008) Zoltan Dezso et al. BMC BIOLOGY
- RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
- (2008) J. C. Marioni et al. GENOME RESEARCH
- Gene Regulation in Primates Evolves under Tissue-Specific Selection Pressures
- (2008) Ran Blekhman et al. PLoS Genetics
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search