Extensive Evolutionary Changes in Regulatory Element Activity during Human Origins Are Associated with Altered Gene Expression and Positive Selection
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Title
Extensive Evolutionary Changes in Regulatory Element Activity during Human Origins Are Associated with Altered Gene Expression and Positive Selection
Authors
Keywords
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Journal
PLoS Genetics
Volume 8, Issue 6, Pages e1002789
Publisher
Public Library of Science (PLoS)
Online
2012-06-29
DOI
10.1371/journal.pgen.1002789
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- (2010) D. Schmidt et al. SCIENCE
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- (2009) R. Blekhman et al. GENOME RESEARCH
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- (2009) S. C. J. Parker et al. SCIENCE
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