Selection constraints determine preference for A/U-ending codons in Taxus contorta

Analysis of codon usage patterns and influencing factors in Nipah virus

(2019) Supriyo Chakraborty et al.   VIRUS RESEARCH

Genome‐wide comparison of codon usage dynamics in mitochondrial genes across different species of amphibian genus Bombina

(2019) Parvin A. Barbhuiya et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Characterizing the heat response of Arabidopsis thaliana from the perspective of codon usage bias and translational regulation

(2019) Duan Chu et al.   JOURNAL OF PLANT PHYSIOLOGY

Analysis of codon usage patterns in Hirudinaria manillensis reveals a preference for GC-ending codons caused by dominant selection constraints

(2018) De-Long Guan et al.   BMC GENOMICS

Genome-wide analysis of codon usage bias in four sequenced cotton species

(2018) Liyuan Wang et al.   PLoS One

Comprehensive Analysis and Comparison on the Codon Usage Pattern of Whole Mycobacterium tuberculosis Coding Genome from Different Area

(2018) Li Gun et al.   Biomed Research International

Gene characteristics of the complete mitochondrial genomes of Paratoxodera polyacantha and Toxodera hauseri (Mantodea: Toxoderidae)

(2018) Le-Ping Zhang et al.   PeerJ

Understanding molecular biology of codon usage in mitochondrial complex IV genes of electron transport system: Relevance to mitochondrial diseases

(2018) Arif Uddin et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Factors affecting the codon usage bias of SRY gene across mammals

(2017) Supriyo Chakraborty et al.   GENE

Codon usage pattern and prediction of gene expression level in Bungarus species

(2017) Supriyo Chakraborty et al.   GENE

Analysis of codon usage patterns in Ginkgo biloba reveals codon usage tendency from A/U-ending to G/C-ending

(2016) Bing He et al.   Scientific Reports

Roles for Synonymous Codon Usage in Protein Biogenesis

(2015) Julie L. Chaney et al.   Annual Review of Biophysics

Non-uniqueness of factors constraint on the codon usage in Bombyx mori

(2015) Xian Jia et al.   BMC GENOMICS

Synonymous Codon Usage Bias in the Plastid Genome is Unrelated to Gene Structure and Shows Evolutionary Heterogeneity

(2015) Yueying Qi et al.   Evolutionary Bioinformatics

A Comprehensive Analysis of Codon Usage Patterns in Blunt Snout Bream (Megalobrama amblycephala) Based on RNA-Seq Data

(2015) Xiaoke Duan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Codon Usage Bias and Determining Forces in <i>Taenia solium</i> Genome

(2015) Xing Yang et al.   KOREAN JOURNAL OF PARASITOLOGY

Analysis of Codon Usage Patterns in Herbaceous Peony (Paeonia lactiflora Pall.) Based on Transcriptome Data

(2015) Yanqing Wu et al.   Genes

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Analysis of codon usage pattern in Taenia saginata based on a transcriptome dataset

(2014) Xing Yang et al.   Parasites & Vectors

Hydrophobicity and Aromaticity Are Primary Factors Shaping Variation in Amino Acid Usage of Chicken Proteome

(2014) Yousheng Rao et al.   PLoS One

Codon usage patterns in Chinese bayberry (Myrica rubra) based on RNA-Seq data

(2013) Chao Feng et al.   BMC GENOMICS

Synonymous Codon Usage in TTSuV2: Analysis and Comparison with TTSuV1

(2013) Zhicheng Zhang et al.   PLoS One

TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes

(2013) Michiel Van Bel et al.   GENOME BIOLOGY

Analysis of codon usage patterns in Taenia pisiformis through annotated transcriptome data

(2012) Lin Chen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Coadaptation of isoacceptor tRNA genes and codon usage bias for translation efficiency in Aedes aegypti and Anopheles gambiae

(2010) S. K. Behura et al.   INSECT MOLECULAR BIOLOGY

Comparative analysis of nuclear tRNA genes ofNasonia vitripennisand other arthropods, and relationships to codon usage bias

(2010) S. K. Behura et al.   INSECT MOLECULAR BIOLOGY

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Forces that influence the evolution of codon bias

(2010) P. M. Sharp et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Toward Engineering Synthetic Microbial Metabolism

(2009) George H. McArthur et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY