WormCat: An Online Tool for Annotation and Visualization of Caenorhabditis elegans Genome-Scale Data

A Persistence Detector for Metabolic Network Rewiring in an Animal

(2019) Jote T. Bulcha et al.   Cell Reports

Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0)

(2019) Huaiyu Mi et al.   Nature Protocols

Drug Synergy Slows Aging and Improves Healthspan through IGF and SREBP Lipid Signaling

(2018) Tesfahun Dessale Admasu et al.   DEVELOPMENTAL CELL

Transcriptome analysis of adult Caenorhabditis elegans cells reveals tissue-specific gene and isoform expression

(2018) Rachel Kaletsky et al.   PLoS Genetics

The Gene Ontology Resource: 20 years and still GOing strong

(2018)   NUCLEIC ACIDS RESEARCH

Stress-responsive and metabolic gene regulation are altered in low S-adenosylmethionine

(2018) Wei Ding et al.   PLoS Genetics

WormBase 2017: molting into a new stage

(2017) Raymond Y N Lee et al.   NUCLEIC ACIDS RESEARCH

Tissue enrichment analysis for C. elegans genomics

(2016) David Angeles-Albores et al.   BMC BIOINFORMATICS

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Cholesterol-Independent SREBP-1 Maturation Is Linked to ARF1 Inactivation

(2016) Lorissa J. Smulan et al.   Cell Reports

s-Adenosylmethionine Levels Govern Innate Immunity through Distinct Methylation-Dependent Pathways

(2015) Wei Ding et al.   Cell Metabolism

Glycogen Fuels Survival During Hyposmotic-Anoxic Stress in Caenorhabditis elegans

(2015) J. C. LaMacchia et al.   GENETICS

A New Dataset of Spermatogenic vs. Oogenic Transcriptomes in the Nematode Caenorhabditis elegans

(2014) M. A. Ortiz et al.   G3-Genes Genomes Genetics

Phospholipid methylation in mammals: from biochemistry to physiological function

(2013) Dennis E. Vance   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Causal analysis approaches in Ingenuity Pathway Analysis

(2013) Andreas Krämer et al.   BIOINFORMATICS

Diet-Induced Developmental Acceleration Independent of TOR and Insulin in C. elegans

(2013) Lesley T. MacNeil et al.   CELL

Complex expression dynamics and robustness in C. elegans insulin networks

(2013) A. D. Ritter et al.   GENOME RESEARCH

Functional transcriptomics of a migrating cell in Caenorhabditis elegans

(2012) E. M. Schwarz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Conserved SREBP-1/Phosphatidylcholine Feedback Circuit Regulates Lipogenesis in Metazoans

(2011) Amy K. Walker et al.   CELL

Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster

(2011) Xinxian Deng et al.   NATURE GENETICS

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

A spatial and temporal map of C. elegans gene expression

(2010) W. C. Spencer et al.   GENOME RESEARCH

Functional modularity of nuclear hormone receptors in a Caenorhabditis elegans metabolic gene regulatory network

(2010) H Efsun Arda et al.   Molecular Systems Biology

Condition-adapted stress and longevity gene regulation byCaenorhabditis elegansSKN-1/Nrf

(2009) Riva P. Oliveira et al.   AGING CELL

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Structural Insight into the Activation Mechanism of Human Pancreatic Prophospholipase A2

(2009) Wei Xu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RNA Pol II Accumulates at Promoters of Growth Genes During Developmental Arrest

(2009) L. Ryan Baugh et al.   SCIENCE