Tissue enrichment analysis for C. elegans genomics

WormBase 2016: expanding to enable helminth genomic research

(2015) Kevin L. Howe et al.   NUCLEIC ACIDS RESEARCH

FunRich: An open access standalone functional enrichment and interaction network analysis tool

(2015) Mohashin Pathan et al.   PROTEOMICS

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

Behavioral avoidance of pathogenic bacteria by Caenorhabditis elegans

(2014) Joshua D. Meisel et al.   TRENDS IN IMMUNOLOGY

Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies

(2013) Young-suk Lee et al.   BIOINFORMATICS

Zebrafish Expression Ontology of Gene Sets (ZEOGS): A Tool to Analyze Enrichment of Zebrafish Anatomical Terms in Large Gene Sets

(2013) Sergey V. Prykhozhij et al.   Zebrafish

PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees

(2012) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

The NumPy Array: A Structure for Efficient Numerical Computation

(2011) Stéfan van der Walt et al.   COMPUTING IN SCIENCE & ENGINEERING

Towards summarizing knowledge: Brief ontologies

(2011) Julián Garrido et al.   EXPERT SYSTEMS WITH APPLICATIONS

A Comprehensive Analysis of Gene Expression Changes Provoked by Bacterial and Fungal Infection in C. elegans

(2011) Ilka Engelmann et al.   PLoS One

Time-lapse imaging and cell-specific expression profiling reveal dynamic branching and molecular determinants of a multi-dendritic nociceptor in C. elegans

(2010) Cody J. Smith et al.   DEVELOPMENTAL BIOLOGY

A spatial and temporal map of C. elegans gene expression

(2010) W. C. Spencer et al.   GENOME RESEARCH

GREAT improves functional interpretation of cis-regulatory regions

(2010) Cory Y McLean et al.   NATURE BIOTECHNOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis elegans

(2009) Maria D. Chikina et al.   PLoS Computational Biology

Complementary RNA amplification methods enhance microarray identification of transcripts expressed in the C. elegans nervous system

(2008) Joseph D Watson et al.   BMC GENOMICS