Root microbiomes as indicators of seagrass health

In situ oxygen dynamics in rhizomes of the seagrass Posidonia sinuosa: impact of light, water column oxygen, current speed and wave velocity

(2018) YS Olsen et al.   MARINE ECOLOGY PROGRESS SERIES

A new mechanistic understanding of light-limitation in the seagrass Zostera muelleri

(2018) Peter A. Davey et al.   MARINE ENVIRONMENTAL RESEARCH

Low Light Availability Alters Root Exudation and Reduces Putative Beneficial Microorganisms in Seagrass Roots

(2018) Belinda C. Martin et al.   Frontiers in Microbiology

In situ oxygen dynamics in rhizomes of the seagrass Posidonia sinuosa: impact of light, water column oxygen, current speed and wave velocity

(2018) YS Olsen et al.   MARINE ECOLOGY PROGRESS SERIES

Oxygen loss from seagrass roots coincides with colonisation of sulphide-oxidising cable bacteria and reduces sulphide stress

(2018) Belinda C. Martin et al.   ISME Journal

Co-existence of Methanogenesis and Sulfate Reduction with Common Substrates in Sulfate-Rich Estuarine Sediments

(2017) Michal Sela-Adler et al.   Frontiers in Microbiology

Ecophysiological Plasticity and Bacteriome Shift in the Seagrass Halophila stipulacea along a Depth Gradient in the Northern Red Sea

(2017) Alice Rotini et al.   Frontiers in Plant Science

Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edge

(2017) Cassandra L. Ettinger et al.   PeerJ

Deciphering composition and function of the root microbiome of a legume plant

(2017) Kyle Hartman et al.   Microbiome

Drought, Mutualism Breakdown, and Landscape-Scale Degradation of Seagrass Beds

(2016) Jimmy de Fouw et al.   CURRENT BIOLOGY

Metabolomics Reveals Cryptic Interactive Effects of Species Interactions and Environmental Stress on Nitrogen and Sulfur Metabolism in Seagrass

(2016) Harald Hasler-Sheetal et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The balance between nitrogen fixation and denitrification on vegetated and non-vegetated intertidal sediments

(2016) Douglas G. Russell et al.   LIMNOLOGY AND OCEANOGRAPHY

New Methods To Unravel Rhizosphere Processes

(2016) Eva Oburger et al.   TRENDS IN PLANT SCIENCE

Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific

(2016) Catarina Cúcio et al.   Frontiers in Microbiology

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Factors controlling nitrogen fixation in temperate seagrass beds

(2015) PLM Cook et al.   MARINE ECOLOGY PROGRESS SERIES

Seagrass derived organic matter influences biogeochemistry, microbial communities, and seedling biomass partitioning in seagrass sediments

(2015) M. W. Fraser et al.   PLANT AND SOIL

Sulfide Intrusion and Detoxification in the Seagrass Zostera marina

(2015) Harald Hasler-Sheetal et al.   PLoS One

Methanogenic archaea and sulfate reducing bacteria co-cultured on acetate: teamwork or coexistence?

(2015) Derya Ozuolmez et al.   Frontiers in Microbiology

Factors controlling nitrogen fixation in temperate seagrass beds

(2015) PLM Cook et al.   MARINE ECOLOGY PROGRESS SERIES

Rainfall Changes over Southwestern Australia and Their Relationship to the Southern Annular Mode and ENSO

(2014) Bhupendra A. Raut et al.   JOURNAL OF CLIMATE

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Development of a ‘sediment-stress’ functional-level indicator for the seagrass Halophila ovalis

(2013) Kieryn Kilminster et al.   ECOLOGICAL INDICATORS

Molecular indicators of chronic seagrass stress: A new era in the management of seagrass ecosystems?

(2013) P.I. Macreadie et al.   ECOLOGICAL INDICATORS

Global warming enhances sulphide stress in a key seagrass species (NW Mediterranean)

(2013) Rosa García et al.   GLOBAL CHANGE BIOLOGY

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Diversity of European seagrass indicators: patterns within and across regions

(2012) Núria Marbà et al.   HYDROBIOLOGIA

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Drift algae, an invasive snail and elevated temperature reduce ecological performance of a warm-temperate seagrass, through additive effects

(2011) H Höffle et al.   MARINE ECOLOGY PROGRESS SERIES

Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species

(2011) S. U. Franssen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Accelerating loss of seagrasses across the globe threatens coastal ecosystems

(2009) M. Waycott et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved group-specific PCR primers for denaturing gradient gel electrophoresis analysis of the genetic diversity of complex microbial communities

(2008) Martin Mühling et al.   ISME Journal