Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edge

Assessing the ecological status of seagrasses using morphology, biochemical descriptors and microbial community analyses. A study in Halophila stipulacea (Forsk.) Aschers meadows in the northern Red Sea

(2016) Astrid Y. Mejia et al.   ECOLOGICAL INDICATORS

Partitioning of functional and taxonomic diversity in surface-associated microbial communities

(2016) Alexandra J. Roth-Schulze et al.   ENVIRONMENTAL MICROBIOLOGY

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

(2016) Jeanine L. Olsen et al.   NATURE

Temporal dynamics of sediment bacterial communities in monospecific stands of Juncus maritimus and Spartina maritima

(2016) D. F. R. Cleary et al.   PLANT BIOLOGY

Lignin engineering in field-grown poplar trees affects the endosphere bacterial microbiome

(2016) Bram Beckers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific

(2016) Catarina Cúcio et al.   Frontiers in Microbiology

Identification of bacterial communities in sediments of Poyang Lake, the largest freshwater lake in China

(2016) Wenbo Kou et al.   SpringerPlus

Seagrass (Zostera marina) Colonization Promotes the Accumulation of Diazotrophic Bacteria and Alters the Relative Abundances of Specific Bacterial Lineages Involved in Benthic Carbon and Sulfur Cycling

(2015) Feifei Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Illumina-based analysis the microbial diversity associated with Thalassia hemprichii in Xincun Bay, South China Sea

(2015) Yu-Feng Jiang et al.   ECOTOXICOLOGY

Variability of sedimentary organic carbon in patchy seagrass landscapes

(2015) Aurora M. Ricart et al.   MARINE POLLUTION BULLETIN

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wild plant species growing closely connected in a subalpine meadow host distinct root-associated bacterial communities

(2015) Kristin Aleklett et al.   PeerJ

Root microbiome relates to plant host evolution in maize and other Poaceae

(2014) Marie-Lara Bouffaud et al.   ENVIRONMENTAL MICROBIOLOGY

Rhizosphere heterogeneity shapes abundance and activity of sulfur-oxidizing bacteria in vegetated salt marsh sediments

(2014) François Thomas et al.   Frontiers in Microbiology

The microbes we eat: abundance and taxonomy of microbes consumed in a day’s worth of meals for three diet types

(2014) Jenna M. Lang et al.   PeerJ

PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?

(2013) Marti J. Anderson et al.   ECOLOGICAL MONOGRAPHS

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sulfide as a soil phytotoxin—a review

(2013) Leon P. M. Lamers et al.   Frontiers in Plant Science

What we can learn from sushi: a review on seaweed-bacterial associations

(2012) Joke Hollants et al.   FEMS MICROBIOLOGY ECOLOGY

Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates

(2012) Jennifer L Bowen et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

A Three-Stage Symbiosis Forms the Foundation of Seagrass Ecosystems

(2012) T. van der Heide et al.   SCIENCE

Edge effects in patchy seagrass landscapes: The role of predation in determining fish distribution

(2011) Timothy M. Smith et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Distance-based multivariate analyses confound location and dispersion effects

(2011) David I. Warton et al.   Methods in Ecology and Evolution

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Taking Root: Enduring Effect of Rhizosphere Bacterial Colonization in Mangroves

(2010) Newton C. M. Gomes et al.   PLoS One

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity

(2008) Stephen J Bent et al.   ISME Journal

Edge effects and trampling in boreal urban forest fragments – impacts on the soil microbial community

(2008) Minna Malmivaara-Lämsä et al.   SOIL BIOLOGY & BIOCHEMISTRY

Edge effects on fish associated with seagrass and sand patches

(2007) TM Smith et al.   MARINE ECOLOGY PROGRESS SERIES