Epigenetics and the dynamics of chromatin during adenovirus infections

Respiratory Virus Infections in Hematopoietic Cell Transplant Recipients

(2019) Cécile Pochon et al.   Frontiers in Microbiology

Epigenetic consequences of genome manipulations: caveats for human germline therapy and genetically modified organisms

(2019) Walter Doerfler   Epigenomics

Adenovirus 5 E1A interacts with E4orf3 to regulate viral chromatin organization

(2019) Andrea Michelle Soriano et al.   JOURNAL OF VIROLOGY

Dedifferentiation by adenovirus E1A due to inactivation of Hippo pathway effectors YAP and TAZ

(2019) Nathan R. Zemke et al.   GENES & DEVELOPMENT

Adenovirus Entry: From Infection to Immunity

(2019) Urs F. Greber et al.   Annual Review of Virology

Adenovirus persistence, reactivation, and clinical management

(2019) Thomas Lion   FEBS LETTERS

The diverse roles of DNA methylation in mammalian development and disease

(2019) Maxim V. C. Greenberg et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Intestinal HAdV Infection: Tissue Specificity, Persistence, and Implications for Antiviral Therapy

(2019) Karin Kosulin   Viruses-Basel

Formation of adenovirus DNA replication compartments

(2019) Paloma Hidalgo et al.   FEBS LETTERS

Viral and cellular interactions during adenovirus DNA replication

(2019) Matthew Charman et al.   FEBS LETTERS

Formation of Chromatin Subcompartments by Phase Separation

(2018) Fabian Erdel et al.   BIOPHYSICAL JOURNAL

PML nuclear bodies: from architecture to function

(2018) Valérie Lallemand-Breitenbach et al.   CURRENT OPINION IN CELL BIOLOGY

In vivo labelling of adenovirus DNA identifies chromatin anchoring and biphasic genome replication.

(2018) Tetsuro Komatsu et al.   JOURNAL OF VIROLOGY

Adenovirus – a deadly disease in the solid organ transplant population – risk factors and outcomes

(2018) Denisa Majorant et al.   TRANSPLANTATION PROCEEDINGS

Serotype-specific restriction of wild-type adenoviruses by the cellular Mre11-Rad50-Nbs1 complex

(2018) Neha J. Pancholi et al.   VIROLOGY

Hacking the Cell: Network Intrusion and Exploitation by Adenovirus E1A

(2018) Cason R. King et al.   mBio

Intestinal Adenovirus Shedding Before Allogeneic Stem Cell Transplantation Is a Risk Factor for Invasive Infection Post-transplant

(2018) Karin Kosulin et al.   EBioMedicine

Nitazoxanide: A Therapeutic Option for Adenovirus Related Enteritis in Immunocompromised Adults

(2018) Zerelda Esquer Garrigos et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Epidemiological Correlation between Fecal Adenovirus Subgroups and Pediatric Intussusception in Korea

(2017) Jooyoung Jang et al.   JOURNAL OF KOREAN MEDICAL SCIENCE

Atomic Structures of Minor Proteins VI and VII in Human Adenovirus

(2017) Xinghong Dai et al.   JOURNAL OF VIROLOGY

Adenovirus Core Protein VII Downregulates the DNA Damage Response on the Host Genome

(2017) Daphne C. Avgousti et al.   JOURNAL OF VIROLOGY

Identifying Host Factors Associated with DNA Replicated During Virus Infection

(2017) Emigdio D. Reyes et al.   MOLECULAR & CELLULAR PROTEOMICS

Phase separation drives heterochromatin domain formation

(2017) Amy R. Strom et al.   NATURE

The 4D nucleome project

(2017) Job Dekker et al.   NATURE

Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin

(2017) Adam G. Larson et al.   NATURE

Intussusception: past, present and future

(2017) Emily A. Edwards et al.   PEDIATRIC RADIOLOGY

Structure of histone-based chromatin in Archaea

(2017) Francesca Mattiroli et al.   SCIENCE

Emerging Insights into the Roles of the Paf1 Complex in Gene Regulation

(2017) S. Branden Van Oss et al.   TRENDS IN BIOCHEMICAL SCIENCES

The adenovirus major core protein VII is dispensable for virion assembly but is essential for lytic infection

(2017) Philomena Ostapchuk et al.   PLoS Pathogens

An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites

(2017) Peter J Skene et al.   eLife

The pathogens profile in children with otitis media with effusion and adenoid hypertrophy

(2017) G. P. Buzatto et al.   PLoS One

Persistence and reactivation of human adenoviruses in the gastrointestinal tract

(2016) K. Kosulin et al.   CLINICAL MICROBIOLOGY AND INFECTION

Adenovirus infection: A potential risk for developing intussusception in pediatric patients

(2016) Nuthapong Ukarapol et al.   JOURNAL OF MEDICAL VIROLOGY

Acetylation-regulated interaction between p53 and SET reveals a widespread regulatory mode

(2016) Donglai Wang et al.   NATURE

A core viral protein binds host nucleosomes to sequester immune danger signals

(2016) Daphne C. Avgousti et al.   NATURE

Single-cell genome sequencing: current state of the science

(2016) Charles Gawad et al.   NATURE REVIEWS GENETICS

Mapping the 3D genome: Aiming for consilience

(2016) Job Dekker   NATURE REVIEWS MOLECULAR CELL BIOLOGY

New players in heterochromatin silencing: histone variant H3.3 and the ATRX/DAXX chaperone

(2016) Hsiao P.J. Voon et al.   NUCLEIC ACIDS RESEARCH

The Persistent Mystery of Adenovirus Persistence

(2016) Cason R. King et al.   TRENDS IN MICROBIOLOGY

Limited but durable changes to cellular gene expression in a model of latent adenovirus infection are reflected in childhood leukemic cell lines

(2016) D.A. Ornelles et al.   VIROLOGY

Dectin-1-activated dendritic cells trigger potent antitumour immunity through the induction of Th9 cells

(2016) Yinghua Zhao et al.   Nature Communications

E2F/Rb Family Proteins Mediate Interferon Induced Repression of Adenovirus Immediate Early Transcription to Promote Persistent Viral Infection

(2016) Yueting Zheng et al.   PLoS Pathogens

Chromatin Fibers Are Formed by Heterogeneous Groups of Nucleosomes In Vivo

(2015) Maria Aurelia Ricci et al.   CELL

Quantitative Proteomic Analysis of Histone Modifications

(2015) He Huang et al.   CHEMICAL REVIEWS

Chromosome domain architecture and dynamic organization of the fission yeast genome

(2015) Takeshi Mizuguchi et al.   FEBS LETTERS

Characterization of histone post-translational modifications during virus infection using mass spectrometry-based proteomics

(2015) Katarzyna Kulej et al.   METHODS

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(2015) Huan Yang et al.   MOLECULAR MEDICINE

Alternative 3′ UTRs act as scaffolds to regulate membrane protein localization

(2015) Binyamin D. Berkovits et al.   NATURE

Sp100A is a tumor suppressor that activates p53-dependent transcription and counteracts E1A/E1B-55K-mediated transformation

(2015) J Berscheminski et al.   ONCOGENE

A Method for Visualization of Incoming Adenovirus Chromatin Complexes in Fixed and Living Cells

(2015) Tetsuro Komatsu et al.   PLoS One

Comprehensive Catalog of Currently Documented Histone Modifications

(2015) Yingming Zhao et al.   Cold Spring Harbor Perspectives in Biology

The Nuclear Oncogene SET Controls DNA Repair by KAP1 and HP1 Retention to Chromatin

(2015) Alkmini Kalousi et al.   Cell Reports

Neonatal Infection with Species C Adenoviruses Confirmed in Viable Cord Blood Lymphocytes

(2015) David A. Ornelles et al.   PLoS One

Understanding the relationship between DNA methylation and histone lysine methylation

(2014) Nathan R. Rose et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Adenovirus Small E1A Employs the Lysine Acetylases p300/CBP and Tumor Suppressor Rb to Repress Select Host Genes and Promote Productive Virus Infection

(2014) Roberto Ferrari et al.   Cell Host & Microbe

Adenovirus Infections in Immunocompetent and Immunocompromised Patients

(2014) T. Lion   CLINICAL MICROBIOLOGY REVIEWS

Analysis of purified Wild type and mutant adenovirus particles by SILAC based quantitative proteomics

(2014) A. Alqahtani et al.   JOURNAL OF GENERAL VIROLOGY

Adenovirus E1A Recruits the Human Paf1 Complex To Enhance Transcriptional Elongation

(2014) G. J. Fonseca et al.   JOURNAL OF VIROLOGY

Genome-Wide DNA Methylation as an Epigenetic Consequence of Epstein-Barr Virus Infection of Immortalized Keratinocytes

(2014) C. E. Birdwell et al.   JOURNAL OF VIROLOGY

HMGB1 in health and disease

(2014) Rui Kang et al.   MOLECULAR ASPECTS OF MEDICINE

CTCF: an architectural protein bridging genome topology and function

(2014) Chin-Tong Ong et al.   NATURE REVIEWS GENETICS

Transcriptional repressors: multifaceted regulators of gene expression

(2013) N. Reynolds et al.   DEVELOPMENT

Chromatin-to-nucleoprotamine transition is controlled by the histone H2B variant TH2B

(2013) E. Montellier et al.   GENES & DEVELOPMENT

The Hippo pathway: regulators and regulations

(2013) F.-X. Yu et al.   GENES & DEVELOPMENT

The many faces of HMGB1: molecular structure-functional activity in inflammation, apoptosis, and chemotaxis

(2013) Huan Yang et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Virion Factors That Target Daxx To Overcome Intrinsic Immunity

(2013) S. Schreiner et al.   JOURNAL OF VIROLOGY

Adenovirus Death Protein (ADP) Is Required for Lytic Infection of Human Lymphocytes

(2013) V. K. Murali et al.   JOURNAL OF VIROLOGY

Modification of Enhancer Chromatin: What, How, and Why?

(2013) Eliezer Calo et al.   MOLECULAR CELL

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

Control of human adenovirus type 5 gene expression by cellular Daxx/ATRX chromatin-associated complexes

(2013) Sabrina Schreiner et al.   NUCLEIC ACIDS RESEARCH

Adenovirus Precursor pVII Protein Stability Is Regulated By Its Propeptide Sequence

(2013) Raviteja Inturi et al.   PLoS One

Persistently adenovirus-infected lymphoid cells express microRNAs derived from the viral VAI and especially VAII RNA

(2013) Yuki Furuse et al.   VIROLOGY

The Role of Chromatin in Adenoviral Vector Function

(2013) Carmen Wong et al.   Viruses-Basel

Molecular evolution of human adenoviruses

(2013) Christopher M. Robinson et al.   Scientific Reports

DNA replication-dependent binding of CTCF plays a critical role in adenovirus genome functions

(2013) Tetsuro Komatsu et al.   Scientific Reports

SPOC1-Mediated Antiviral Host Cell Response Is Antagonized Early in Human Adenovirus Type 5 Infection

(2013) Sabrina Schreiner et al.   PLoS Pathogens

Viral Retasking of hBre1/RNF20 to Recruit hPaf1 for Transcriptional Activation

(2013) Gregory J. Fonseca et al.   PLoS Pathogens

A Structural Basis for the Assembly and Functions of a Viral Polymer that Inactivates Multiple Tumor Suppressors

(2012) Horng D. Ou et al.   CELL

Adenovirus Evasion of Interferon-Mediated Innate Immunity by Direct Antagonism of a Cellular Histone Posttranslational Modification

(2012) G.J. Fonseca et al.   Cell Host & Microbe

Reorganization of the host epigenome by a viral oncogene

(2012) R. Ferrari et al.   GENOME RESEARCH

Viral Oncogenes, Noncoding RNAs, and RNA Splicing in Human Tumor Viruses

(2012) Zhi-Ming Zheng   International Journal of Biological Sciences

High Rates of Detection of Respiratory Viruses in Tonsillar Tissues from Children with Chronic Adenotonsillar Disease

(2012) Jose Luiz Proenca-Modena et al.   PLoS One

HMGB1-Facilitated p53 DNA Binding Occurs via HMG-Box/p53 Transactivation Domain Interaction, Regulated by the Acidic Tail

(2012) John P. Rowell et al.   STRUCTURE

Viral-Bacterial Interactions and Risk of Acute Otitis Media Complicating Upper Respiratory Tract Infection

(2011) Melinda M. Pettigrew et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Adenovirus Core Protein VII Protects the Viral Genome from a DNA Damage Response at Early Times after Infection

(2011) K. A. Karen et al.   JOURNAL OF VIROLOGY

Chromatin structure of adenovirus DNA throughout infection

(2011) A. N. Giberson et al.   NUCLEIC ACIDS RESEARCH

Adenoviruses in Lymphocytes of the Human Gastro-Intestinal Tract

(2011) Soumitra Roy et al.   PLoS One

HMGB proteins: Interactions with DNA and chromatin

(2010) Michal Štros   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Viral hit and run-oncogenesis: Genetic and epigenetic scenarios

(2010) Hans Helmut Niller et al.   CANCER LETTERS

Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells

(2010) Guillaume J. Filion et al.   CELL

Evolution of Eukaryotic DNA Methylation and the Pursuit of Safer Sex

(2010) Assaf Zemach et al.   CURRENT BIOLOGY

The MRN complex in double-strand break repair and telomere maintenance

(2010) Brandon J. Lamarche et al.   FEBS LETTERS

Modeling Adenovirus Latency in Human Lymphocyte Cell Lines

(2010) Y. Zhang et al.   JOURNAL OF VIROLOGY

Proteasome-Dependent Degradation of Daxx by the Viral E1B-55K Protein in Human Adenovirus-Infected Cells

(2010) S. Schreiner et al.   JOURNAL OF VIROLOGY

Heterochromatin silencing of p53 target genes by a small viral protein

(2010) Conrado Soria et al.   NATURE

Cellular and viral chromatin proteins are positive factors in the regulation of adenovirus gene expression

(2010) Tetsuro Komatsu et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

EBV transformation and cell culturing destabilizes DNA methylation in human lymphoblastoid cell lines

(2009) D. Grafodatskaya et al.   GENOMICS

Human DNA methylomes at base resolution show widespread epigenomic differences

(2009) Ryan Lister et al.   NATURE

Viral manipulation of the host epigenome for oncogenic transformation

(2009) Roberto Ferrari et al.   NATURE REVIEWS GENETICS

Epigenetic mechanisms in human adenovirus type 12 oncogenesis

(2009) Walter Doerfler   SEMINARS IN CANCER BIOLOGY

Adenoviruses in Immunocompromised Hosts

(2008) M. Echavarria   CLINICAL MICROBIOLOGY REVIEWS

TEAD mediates YAP-dependent gene induction and growth control

(2008) B. Zhao et al.   GENES & DEVELOPMENT

Latent Species C Adenoviruses in Human Tonsil Tissues

(2008) C. T. Garnett et al.   JOURNAL OF VIROLOGY

Oncogenes and Cancer

(2008) Carlo M. Croce   NEW ENGLAND JOURNAL OF MEDICINE

Adenovirus Small e1a Alters Global Patterns of Histone Modification

(2008) G. A. Horwitz et al.   SCIENCE

Epigenetic Reprogramming by Adenovirus e1a

(2008) R. Ferrari et al.   SCIENCE