The torpedo effect in Bacillus subtilis : RN ase J1 resolves stalled transcription complexes

Mechanisms of Transcriptional Pausing in Bacteria

(2019) Jin Young Kang et al.   JOURNAL OF MOLECULAR BIOLOGY

Mfd Dynamically Regulates Transcription via a Release and Catch-Up Mechanism

(2018) Tung T. Le et al.   CELL

Structural Basis for NusA Stabilized Transcriptional Pausing

(2018) Xieyang Guo et al.   MOLECULAR CELL

Immunohistochemical localization of exoribonucleases (DIS3L2 and XRN1) in intranuclear inclusion body disease

(2018) Fumiaki Mori et al.   NEUROSCIENCE LETTERS

Identification, Biosynthesis, and Decapping of NAD-Capped RNAs in B. subtilis

(2018) Jens Frindert et al.   Cell Reports

Substrate Specificity for Bacterial RNases HII and HIII Is Influenced by Metal Availability

(2017) Justin R. Randall et al.   JOURNAL OF BACTERIOLOGY

Genome-wide Analysis of RNA Polymerase II Termination at Protein-Coding Genes

(2017) Carlo Baejen et al.   MOLECULAR CELL

SubtiWiki in 2018: from genes and proteins to functional network annotation of the model organism Bacillus subtilis

(2017) Bingyao Zhu et al.   NUCLEIC ACIDS RESEARCH

The structure and function of an RNA polymerase interaction domain in the PcrA/UvrD helicase

(2017) Kelly Sanders et al.   NUCLEIC ACIDS RESEARCH

Ribosome pausing, arrest and rescue in bacteria and eukaryotes

(2017) Allen R. Buskirk et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Mutagenic cost of ribonucleotides in bacterial DNA

(2017) Jeremy W. Schroeder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Architecture of a transcribing-translating expressome

(2017) R. Kohler et al.   SCIENCE

Termination factor Rho: From the control of pervasive transcription to cell fate determination in Bacillus subtilis

(2017) Vladimir Bidnenko et al.   PLoS Genetics

Conflict Resolution in the Genome: How Transcription and Replication Make It Work

(2016) Stephan Hamperl et al.   CELL

NusG Is a Sequence-specific RNA Polymerase Pause Factor That Binds to the Non-template DNA within the Paused Transcription Bubble

(2016) Alexander V. Yakhnin et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Connections Underlying Translation and mRNA Stability

(2016) Aditya Radhakrishnan et al.   JOURNAL OF MOLECULAR BIOLOGY

Dual-function small regulatory RNAs in bacteria

(2016) Matthias Gimpel et al.   MOLECULAR MICROBIOLOGY

Reconstruction of bacterial transcription-coupled repair at single-molecule resolution

(2016) Jun Fan et al.   NATURE

Cascading MutS and MutL sliding clamps control DNA diffusion to activate mismatch repair

(2016) Jiaquan Liu et al.   NATURE

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Non-Enzymatic Oligomerization of 3’, 5’ Cyclic AMP

(2016) Giovanna Costanzo et al.   PLoS One

Localization of Components of the RNA-Degrading Machine in Bacillus subtilis

(2016) Nora Cascante-Estepa et al.   Frontiers in Microbiology

Nucleotide Excision Repair and Transcription-coupled DNA Repair Abrogate the Impact of DNA Damage on Transcription

(2015) Aditi Nadkarni et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

RNA polymerase-induced remodelling of NusA produces a pause enhancement complex

(2015) Cong Ma et al.   NUCLEIC ACIDS RESEARCH

Unraveling the mechanistic features of RNA polymerase II termination by the 5′-3′ exoribonuclease Rat1

(2015) Jieun Park et al.   NUCLEIC ACIDS RESEARCH

Chemistry and Biology of Self-Cleaving Ribozymes

(2015) Randi M. Jimenez et al.   TRENDS IN BIOCHEMICAL SCIENCES

Insights into the Mechanism of Action of Bactericidal Lipophosphonoxins

(2015) Natalya Panova et al.   PLoS One

Structural basis for promoter specificity switching of RNA polymerase by a phage factor

(2014) S. Tagami et al.   GENES & DEVELOPMENT

 , a New Subunit of RNA Polymerase Found in Gram-Positive Bacteria

(2014) A. N. Keller et al.   JOURNAL OF BACTERIOLOGY

DksA Guards Elongating RNA Polymerase against Ribosome-Stalling-Induced Arrest

(2014) Yan Zhang et al.   MOLECULAR CELL

Small stable RNA maturation and turnover inBacillus subtilis

(2014) Laetitia Gilet et al.   MOLECULAR MICROBIOLOGY

UvrD facilitates DNA repair by pulling RNA polymerase backwards

(2014) Vitaly Epshtein et al.   NATURE

Structural basis for translocation by AddAB helicase–nuclease and its arrest at χ sites

(2014) Wojciech W. Krajewski et al.   NATURE

Characterization of HelD, an interacting partner of RNA polymerase from Bacillus subtilis

(2014) Jana Wiedermannová et al.   NUCLEIC ACIDS RESEARCH

Bacillus subtilis Mutants with Knockouts of the Genes Encoding Ribonucleases RNase Y and RNase J1 Are Viable, with Major Defects in Cell Morphology, Sporulation, and Competence

(2013) S. Figaro et al.   JOURNAL OF BACTERIOLOGY

Functional Analysis of the Protein Veg, Which Stimulates Biofilm Formation in Bacillus subtilis

(2013) Y. Lei et al.   JOURNAL OF BACTERIOLOGY

Dismantling Promoter-driven RNA Polymerase II Transcription Complexesin Vitroby the Termination Factor Rat1

(2013) Erika L. Pearson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Global Analysis of Eukaryotic mRNA Degradation Reveals Xrn1-Dependent Buffering of Transcript Levels

(2013) Mai Sun et al.   MOLECULAR CELL

Specificity of RppH-dependent RNA degradation in Bacillus subtilis

(2013) P.-k. Hsieh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

RNA Polymerase Backtracking in Gene Regulation and Genome Instability

(2012) Evgeny Nudler   CELL

DNA Repair and Genome Maintenance in Bacillus subtilis

(2012) J. S. Lenhart et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases

(2012) Martin Lehnik-Habrink et al.   MOLECULAR MICROBIOLOGY

Archaeal β-CASP ribonucleases of the aCPSF1 family are orthologs of the eukaryal CPSF-73 factor

(2012) Duy Khanh Phung et al.   NUCLEIC ACIDS RESEARCH

Definition of the σW Regulon of Bacillus subtilis in the Absence of Stress

(2012) Jessica C. Zweers et al.   PLoS One

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Three Essential Ribonucleases—RNase Y, J1, and III—Control the Abundance of a Majority of Bacillus subtilis mRNAs

(2012) Sylvain Durand et al.   PLoS Genetics

Transcription Factor GreA Contributes to Resolving Promoter-Proximal Pausing of RNA Polymerase in Bacillus subtilis Cells

(2011) Y. Kusuya et al.   JOURNAL OF BACTERIOLOGY

Crystal structure of the bacteriophage T4 late-transcription coactivator gp33 with the  -subunit flap domain of Escherichia coli RNA polymerase

(2011) K.-A. F. Twist et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Basis for the Recognition and Cleavage of RNA by the Bifunctional 5′–3′ Exo/Endoribonuclease RNase J

(2011) Audrey Dorléans et al.   STRUCTURE

Small subunits of RNA polymerase: localization, levels and implications for core enzyme composition

(2010) G. P. Doherty et al.   MICROBIOLOGY-SGM

The Bacillus subtilis σM regulon and its contribution to cell envelope stress responses

(2010) Warawan Eiamphungporn et al.   MOLECULAR MICROBIOLOGY

Gene position in a long operon governs motility development inBacillus subtilis

(2010) Loralyn M. Cozy et al.   MOLECULAR MICROBIOLOGY

An allosteric mechanism of Rho-dependent transcription termination

(2010) Vitaly Epshtein et al.   NATURE

What is the role of RNase J in mRNA turnover?

(2010) Ciarán Condon   RNA Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

TorpedoNuclease Rat1 Is Insufficient to Terminate RNA Polymerase IIin Vitro

(2009) Stefan Dengl et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Partial functional redundancy of MreB isoforms, MreB, Mbl and MreBH, in cell morphogenesis ofBacillus subtilis

(2009) Yoshikazu Kawai et al.   MOLECULAR MICROBIOLOGY

Bacillus subtilisribonucleases J1 and J2 form a complex with altered enzyme behaviour

(2009) Nathalie Mathy et al.   MOLECULAR MICROBIOLOGY

Mechanism of sequence-specific pausing of bacterial RNA polymerase

(2009) M. L. Kireeva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rho directs widespread termination of intragenic and stable RNA transcription

(2009) J. M. Peters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Applied Force Reveals Mechanistic and Energetic Details of Transcription Termination

(2008) Matthew H. Larson et al.   CELL

Studies of the 5' Exonuclease and Endonuclease Activities of CPSF-73 in Histone Pre-mRNA Processing

(2008) X.-c. Yang et al.   MOLECULAR AND CELLULAR BIOLOGY