Computational Prediction of Ubiquitination Proteins Using Evolutionary Profiles and Functional Domain Annotation

Capsule network for protein post-translational modification site prediction

(2018) Duolin Wang et al.   BIOINFORMATICS

Systematic approaches to identify E3 ligase substrates

(2016) M. Iconomou et al.   BIOCHEMICAL JOURNAL

Computational methods for ubiquitination site prediction using physicochemical properties of protein sequences

(2016) Binghuang Cai et al.   BMC BIOINFORMATICS

UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines

(2016) Chien-Hsun Huang et al.   BMC Systems Biology

iPhos-PseEvo: Identifying Human Phosphorylated Proteins by Incorporating Evolutionary Information into General PseAAC via Grey System Theory

(2016) Wang-Ren Qiu et al.   Molecular Informatics

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

Towards more accurate prediction of ubiquitination sites: a comprehensive review of current methods, tools and features

(2014) Zhen Chen et al.   BRIEFINGS IN BIOINFORMATICS

Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites

(2013) Xiang Chen et al.   BIOINFORMATICS

Predicting Secretory Proteins of Malaria Parasite by Incorporating Sequence Evolution Information into Pseudo Amino Acid Composition via Grey System Model

(2012) Wei-Zhong Lin et al.   PLoS One

The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012

(2012) T. K. Attwood et al.   Database-The Journal of Biological Databases and Curation

Prediction of lysine ubiquitination with mRMR feature selection and analysis

(2011) Yudong Cai et al.   AMINO ACIDS

Prediction of Lysine Ubiquitylation with Ensemble Classifier and Feature Selection

(2011) Xiaowei Zhao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Prediction of Ubiquitination Sites by Using the Composition of k-Spaced Amino Acid Pairs

(2011) Zhen Chen et al.   PLoS One

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

Pseudo Amino Acid Composition and its Applications in Bioinformatics, Proteomics and System Biology

(2009) Kuo-Chen Chou   Current Proteomics

PROSITE, a protein domain database for functional characterization and annotation

(2009) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

Identification, analysis, and prediction of protein ubiquitination sites

(2009) Predrag Radivojac et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Application of protein grey incidence degree measure to predict protein quaternary structural types

(2008) Xuan Xiao et al.   AMINO ACIDS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH