Computational methods for ubiquitination site prediction using physicochemical properties of protein sequences

Enhancing protein-vitamin binding residues prediction by multiple heterogeneous subspace SVMs ensemble

(2014) Dong-Jun Yu et al.   BMC BIOINFORMATICS

Transient protein-protein interface prediction: datasets, features, algorithms, and the RAD-T predictor

(2014) Calem J Bendell et al.   BMC BIOINFORMATICS

Sequence-based identification of recombination spots using pseudo nucleic acid representation and recursive feature extraction by linear kernel SVM

(2014) Liqi Li et al.   BMC BIOINFORMATICS

Towards more accurate prediction of ubiquitination sites: a comprehensive review of current methods, tools and features

(2014) Zhen Chen et al.   BRIEFINGS IN BIOINFORMATICS

A comparative analysis of methods for predicting clinical outcomes using high-dimensional genomic datasets

(2014) Xia Jiang et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

RUBI: rapid proteomic-scale prediction of lysine ubiquitination and factors influencing predictor performance

(2013) Ian Walsh et al.   AMINO ACIDS

Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites

(2013) Xiang Chen et al.   BIOINFORMATICS

Statistical analysis of dendritic spine distributions in rat hippocampal cultures

(2013) Aruna Jammalamadaka et al.   BMC BIOINFORMATICS

A novel artificial neural network method for biomedical prediction based on matrix pseudo-inversion

(2013) Binghuang Cai et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Mining Pure, Strict Epistatic Interactions from High-Dimensional Datasets: Ameliorating the Curse of Dimensionality

(2012) Xia Jiang et al.   PLoS One

Prediction of lysine ubiquitination with mRMR feature selection and analysis

(2011) Yudong Cai et al.   AMINO ACIDS

Learning genetic epistasis using Bayesian network scoring criteria

(2011) Xia Jiang et al.   BMC BIOINFORMATICS

The application of naive Bayes model averaging to predict Alzheimer's disease from genome-wide data

(2011) Wei Wei et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Systematic and Quantitative Assessment of the Ubiquitin-Modified Proteome

(2011) Woong Kim et al.   MOLECULAR CELL

Prediction of Ubiquitination Sites by Using the Composition of k-Spaced Amino Acid Pairs

(2011) Zhen Chen et al.   PLoS One

A Bayesian Method for Evaluating and Discovering Disease Loci Associations

(2011) Xia Jiang et al.   PLoS One

Identifying genetic interactions in genome-wide data using Bayesian networks

(2010) Xia Jiang et al.   GENETIC EPIDEMIOLOGY

Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling

(2010) Guoqiang Xu et al.   NATURE BIOTECHNOLOGY

Bayesian lasso regression

(2009) C. Hans   BIOMETRIKA

Identification, analysis, and prediction of protein ubiquitination sites

(2009) Predrag Radivojac et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Computational identification of ubiquitylation sites from protein sequences

(2008) Chun-Wei Tung et al.   BMC BIOINFORMATICS