Genome-wide analysis of long non-coding RNAs (lncRNAs) in two contrasting rapeseed (Brassica napus L.) genotypes subjected to drought stress and re-watering

Differential co-expression networks of long non-coding RNAs and mRNAs in Cleistogenes songorica under water stress and during recovery

(2019) Qi Yan et al.   BMC PLANT BIOLOGY

Identification of lncRNAs responsive to infection by Plasmodiophora brassicae in clubroot-susceptible and -resistant Brassica napus lines carrying resistance introgressed from rutabaga

(2019) Aarohi Summanwar et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A novel sweetpotato bZIP transcription factor gene, IbbZIP1, is involved in salt and drought tolerance in transgenic Arabidopsis

(2019) Chen Kang et al.   PLANT CELL REPORTS

Long noncoding RNAs in Brassica rapa L. following vernalization

(2019) Daniel J. Shea et al.   Scientific Reports

Non-coding RNAs: Functional roles in the regulation of stress response in Brassica crops

(2019) Waqas Ahmed et al.   GENOMICS

Genome-wide investigation of regulatory roles of lncRNAs in response to heat and drought stress in Brassica juncea (Indian mustard)

(2019) Garima Bhatia et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Genome-wide analysis of long non-coding RNAs affecting roots development at an early stage in the rice response to cadmium stress

(2018) Liang Chen et al.   BMC GENOMICS

Long non-coding RNAs of switchgrass (Panicum virgatum L.) in multiple dehydration stresses

(2018) Chao Zhang et al.   BMC PLANT BIOLOGY

Dissecting the complex regulation of lodging resistance in Brassica napus

(2018) Charlotte N. Miller et al.   MOLECULAR BREEDING

Transcriptome and physiological analyses reveal that AM1 as an ABA-mimicking ligand improves drought resistance in Brassica napus

(2018) Jun-Lan Xiong et al.   PLANT GROWTH REGULATION

Genome-wide identification, putative functionality and interactions between lncRNAs and miRNAs in Brassica species

(2018) Jinfang Zhang et al.   Scientific Reports

Integrative analysis of genome-wide lncRNA and mRNA expression in newly synthesized Brassica hexaploids

(2018) Ruihua Wang et al.   Ecology and Evolution

Long Non-Coding RNAs Responsive to Salt and Boron Stress in the Hyper-Arid Lluteño Maize from Atacama Desert

(2018) Wilson Huanca-Mamani et al.   Genes

Genome-Wide Identification and Functional Prediction of Novel Drought-Responsive lncRNAs in Pyrus betulifolia

(2018) Jinxing Wang et al.   Genes

24-Epibrassinolide-alleviated drought stress damage influences antioxidant enzymes and autophagy changes in peach (Prunus persicae L.) leaves

(2018) Xuxu Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The RLA1/SMOS1 Transcription Factor Functions with OsBZR1 to Regulate Brassinosteroid Signaling and Rice Architecture

(2017) Shenglong Qiao et al.   PLANT CELL

A Nucleus-Localized Long Non-Coding RNA Enhances Drought and Salt Stress Tolerance

(2017) Tao Qin et al.   PLANT PHYSIOLOGY

Genome-wide identification of gene expression in contrasting maize inbred lines under field drought conditions reveals the significance of transcription factors in drought tolerance

(2017) Xiaojing Zhang et al.   PLoS One

Abiotic Stresses Cause Differential Regulation of Alternative Splice Forms of GATA Transcription Factor in Rice

(2017) Priyanka Gupta et al.   Frontiers in Plant Science

Transcriptomic basis for drought-resistance in Brassica napus L.

(2017) Pei Wang et al.   Scientific Reports

Genome-wide identification and functional prediction of cold and/or drought-responsive lncRNAs in cassava

(2017) Shuxia Li et al.   Scientific Reports

AM1 is a potential ABA substitute for drought tolerance as revealed by physiological and ultra-structural responses of oilseed rape

(2016) Muhammad Shahbaz Naeem et al.   ACTA PHYSIOLOGIAE PLANTARUM

Temperature expression patterns of genes and their coexpression with LncRNAs revealed by RNA-Seq in non-heading Chinese cabbage

(2016) Xiaoming Song et al.   BMC GENOMICS

Genome-wide identification and functional prediction of nitrogen-responsive intergenic and intronic long non-coding RNAs in maize (Zea mays L.)

(2016) Yuanda Lv et al.   BMC GENOMICS

Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice

(2016) Pil Joong Chung et al.   BMC GENOMICS

Drought stress tolerance strategies revealed by RNA-Seq in two sorghum genotypes with contrasting WUE

(2016) Alessandra Fracasso et al.   BMC PLANT BIOLOGY

Identification and characterization of wheat drought-responsive MYB transcription factors involved in the regulation of cuticle biosynthesis

(2016) Huihui Bi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Microarray Analysis of lncRNA and mRNA Expression Profiles in Patients with Neuromyelitis Optica

(2016) Jing Xu et al.   MOLECULAR NEUROBIOLOGY

Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation

(2016) Fuqiang Cui et al.   Molecular Plant

Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants

(2016) Madoka Kudo et al.   PLANT BIOTECHNOLOGY JOURNAL

The Plant Heat Stress Transcription Factors (HSFs): Structure, Regulation, and Function in Response to Abiotic Stresses

(2016) Meng Guo et al.   Frontiers in Plant Science

Genome-Wide Analysis of Long Noncoding RNAs and Their Responses to Drought Stress in Cotton (Gossypium hirsutum L.)

(2016) Xuke Lu et al.   PLoS One

Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus

(2016) Raj Kumar Joshi et al.   PLoS One

Tobacco drought stress responses reveal new targets for Solanaceae crop improvement

(2015) Roel C Rabara et al.   BMC GENOMICS

Identification and characterization of long non-coding RNAs involved in osmotic and salt stress in Medicago truncatula using genome-wide high-throughput sequencing

(2015) Tian-Zuo Wang et al.   BMC PLANT BIOLOGY

Comparative Analysis of the Brassica napus Root and Leaf Transcript Profiling in Response to Drought Stress

(2015) Chunqing Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-wide screening for novel, drought stress-responsive long non-coding RNAs in drought-stressed leaf transcriptome of drought-tolerant and -susceptible banana (Musa spp) cultivars using Illumina high-throughput sequencing

(2015) M. Muthusamy et al.   Plant Biotechnology Reports

A maize phytochrome-interacting factor 3 improves drought and salt stress tolerance in rice

(2015) Yong Gao et al.   PLANT MOLECULAR BIOLOGY

Identification of Putative Candidate Genes for Water Stress Tolerance in Canola (Brassica napus)

(2015) Jing Zhang et al.   Frontiers in Plant Science

A novel bHLH transcription factor PebHLH35 from Populus euphratica confers drought tolerance through regulating stomatal development, photosynthesis and growth in Arabidopsis

(2014) Yan Dong et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

General mechanisms of drought response and their application in drought resistance improvement in plants

(2014) Yujie Fang et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis

(2014) Florian Bardou et al.   DEVELOPMENTAL CELL

Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa

(2014) Peng Shuai et al.   JOURNAL OF EXPERIMENTAL BOTANY

Functional Consequences of Splicing of the Antisense Transcript COOLAIR on FLC Transcription

(2014) Sebastian Marquardt et al.   MOLECULAR CELL

Transcriptome-wide identification of bread wheat WRKY transcription factors in response to drought stress

(2014) Sezer Okay et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide expression analysis of soybean NF-Y genes reveals potential function in development and drought response

(2014) Truyen N. Quach et al.   MOLECULAR GENETICS AND GENOMICS

Characterization of stress-responsive lncRNAs inArabidopsis thalianaby integrating expression, epigenetic and structural features

(2014) Chao Di et al.   PLANT JOURNAL

Possible roles of basic helix-loop-helix transcription factors in adaptation to drought

(2014) Graciela Castilhos et al.   PLANT SCIENCE

Genome-wide identification of novel long non-coding RNAs in Populus tomentosa tension wood, opposite wood and normal wood xylem by RNA-seq

(2014) Jinhui Chen et al.   PLANTA

Identification of Maize Long Non-Coding RNAs Responsive to Drought Stress

(2014) Wei Zhang et al.   PLoS One

Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light

(2014) Y. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide discovery and characterization of maize long non-coding RNAs

(2014) Lin Li et al.   GENOME BIOLOGY

Genetic Engineering and Breeding of Drought-Resistant Crops

(2013) Honghong Hu et al.   Annual Review of Plant Biology

Long noncoding RNAs: New regulators in plant development

(2013) Yu-Chan Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Gene regulation by the act of long non-coding RNA transcription

(2013) Aleksandra E Kornienko et al.   BMC BIOLOGY

Auxin metabolism and homeostasis during plant development

(2013) K. Ljung   DEVELOPMENT

Historic and future increase in the global land area affected by monthly heat extremes

(2013) Dim Coumou et al.   Environmental Research Letters

Long Noncoding RNAs: Past, Present, and Future

(2013) J. T. Y. Kung et al.   GENETICS

Long noncoding RNAs responsive toFusarium oxysporuminfection inArabidopsis thaliana

(2013) Qian-Hao Zhu et al.   NEW PHYTOLOGIST

Osmotic Stress Responses and Plant Growth Controlled by Potassium Transporters in Arabidopsis

(2013) Y. Osakabe et al.   PLANT CELL

TheArabidopsis GIBBERELLIN METHYL TRANSFERASE 1suppresses gibberellin activity, reduces whole-plant transpiration and promotes drought tolerance in transgenic tomato

(2013) IDO NIR et al.   PLANT CELL AND ENVIRONMENT

Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing

(2013) Xin Qi et al.   PLANT MOLECULAR BIOLOGY

Cytokinin Signaling Networks

(2012) Ildoo Hwang et al.   Annual Review of Plant Biology

Carbohydrate Dynamics in Leaves of Rapeseed (Brassica napus) Under Drought

(2012) T. Müller et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Identification and characterization of microRNAs from wheat (Triticum aestivum L.) under phosphorus deprivation

(2012) Xiaolei Zhao et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

RNA discrimination

(2012) Monika S. Kowalczyk et al.   NATURE

Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses

(2012) Eunkyoo Oh et al.   NATURE CELL BIOLOGY

Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs

(2012) V. A. Moran et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

The ABA signal transduction mechanism in commercial crops: learning from Arabidopsis

(2012) Giora Ben-Ari   PLANT CELL REPORTS

A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

(2012) J. Ding et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MYBL2 is a substrate of GSK3-like kinase BIN2 and acts as a corepressor of BES1 in brassinosteroid signaling pathway in Arabidopsis

(2012) H. Ye et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A novel hypoxic stress-responsive long non-coding RNA transcribed by RNA polymerase III in Arabidopsis

(2012) Juan Wu et al.   RNA Biology

How do plants feel the heat?

(2012) Ron Mittler et al.   TRENDS IN BIOCHEMICAL SCIENCES

Increasing drought under global warming in observations and models

(2012) Aiguo Dai   Nature Climate Change

AP2/ERF family transcription factors in plant abiotic stress responses

(2011) Junya Mizoi et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing

(2011) Mingming Xin et al.   BMC PLANT BIOLOGY

No-Nonsense Functions for Long Noncoding RNAs

(2011) Takashi Nagano et al.   CELL

Generic signal-specific responses: cytokinin and context-dependent cellular responses

(2011) B. Muller   JOURNAL OF EXPERIMENTAL BOTANY

Signal transduction during cold, salt, and drought stresses in plants

(2011) Guo-Tao Huang et al.   MOLECULAR BIOLOGY REPORTS

lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements

(2011) Chenguang Gong et al.   NATURE

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

(2011) Tiffany Hung et al.   NATURE GENETICS

Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network

(2011) Qi Liao et al.   NUCLEIC ACIDS RESEARCH

Long Noncoding RNAs, Chromatin, and Development

(2011) Daniel P. Caley et al.   TheScientificWorldJOURNAL

Long noncoding RNA: unveiling hidden layer of gene regulatory networks

(2011) Eun-Deok Kim et al.   TRENDS IN PLANT SCIENCE

Abscisic Acid: Emergence of a Core Signaling Network

(2010) Sean R. Cutler et al.   Annual Review of Plant Biology

The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation

(2010) Vidisha Tripathi et al.   MOLECULAR CELL

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

LincRNAs join the pluripotency alliance

(2010) Jia-Hui Ng et al.   NATURE GENETICS

OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice

(2010) Ju-Seok Seo et al.   PLANT JOURNAL

Expression of StMYB1R-1, a Novel Potato Single MYB-Like Domain Transcription Factor, Increases Drought Tolerance

(2010) D. Shin et al.   PLANT PHYSIOLOGY

Effect of brassinosteroids on drought resistance and abscisic acid concentration in tomato under water stress

(2010) Gao-Feng Yuan et al.   SCIENTIA HORTICULTURAE

Plant molecular stress responses face climate change

(2010) Ishita Ahuja et al.   TRENDS IN PLANT SCIENCE

Long noncoding RNAs: functional surprises from the RNA world

(2009) J. E. Wilusz et al.   GENES & DEVELOPMENT

Long non-coding RNAs: insights into functions

(2009) Tim R. Mercer et al.   NATURE REVIEWS GENETICS

Plant drought stress: effects, mechanisms and management

(2008) M. Farooq et al.   Agronomy for Sustainable Development

Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses

(2008) B. Ben Amor et al.   GENOME RESEARCH

A ncRNA Modulates Histone Modification and mRNA Induction in the Yeast GAL Gene Cluster

(2008) Jonathan Houseley et al.   MOLECULAR CELL

Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of β-secretase

(2008) Mohammad Ali Faghihi et al.   NATURE MEDICINE

SodERF3, a Novel Sugarcane Ethylene Responsive Factor (ERF), Enhances Salt and Drought Tolerance when Overexpressed in Tobacco Plants

(2008) L. E. Trujillo et al.   PLANT AND CELL PHYSIOLOGY

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL

Chemical root to shoot signaling under drought

(2008) Daniel P. Schachtman et al.   TRENDS IN PLANT SCIENCE