Long noncoding RNAs in Brassica rapa L. following vernalization

The role of FLOWERING LOCUS C in vernalization of Brassica: the importance of vernalization research in the face of climate change

(2018) Daniel J. Shea et al.   Crop & Pasture Science

Isolation and Functional Characterization of a Floral Repressor, BcMAF1, From Pak-choi (Brassica rapa ssp. Chinensis)

(2018) Feiyi Huang et al.   Frontiers in Plant Science

ELF18-INDUCED LONG-NONCODING RNA Associates with Mediator to Enhance Expression of Innate Immune Response Genes in Arabidopsis

(2017) Jun Sung Seo et al.   PLANT CELL

Epigenetic regulation of agronomical traits in Brassicaceae

(2017) Etsuko Itabashi et al.   PLANT CELL REPORTS

Non-coding RNAs and Their Roles in Stress Response in Plants

(2017) Jingjing Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Genome-wide identification and functional prediction of cold and/or drought-responsive lncRNAs in cassava

(2017) Shuxia Li et al.   Scientific Reports

Temperature expression patterns of genes and their coexpression with LncRNAs revealed by RNA-Seq in non-heading Chinese cabbage

(2016) Xiaoming Song et al.   BMC GENOMICS

Development of primer sets that can verify the enrichment of histone modifications, and their application to examining vernalization-mediated chromatin changes in Brassica rapa L.

(2016) Takahiro Kawanabe et al.   GENES & GENETIC SYSTEMS

Genome-wide identification and characterization of novel lncRNAs in Populus under nitrogen deficiency

(2016) Min Chen et al.   MOLECULAR GENETICS AND GENOMICS

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Control of seed dormancy inArabidopsisby acis-acting noncoding antisense transcript

(2016) Halina Fedak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome resequencing and comparative variome analysis in a Brassica rapa and Brassica oleracea collection

(2016) Feng Cheng et al.   Scientific Data

Functional analysis of long intergenic non-coding RNAs in phosphate-starved rice using competing endogenous RNA network

(2016) Xi-Wen Xu et al.   Scientific Reports

Long non-coding RNAs and their functions in plants

(2015) Julia A Chekanova   CURRENT OPINION IN PLANT BIOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Long noncoding RNA transcriptome of plants

(2015) Jun Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

Tuning growth cycles ofBrassicacrops via natural antisense transcripts ofBrFLC

(2015) Xiaorong Li et al.   PLANT BIOTECHNOLOGY JOURNAL

How is FLC repression initiated by cold?

(2015) Chris A. Helliwell et al.   TRENDS IN PLANT SCIENCE

Characterization of stress-responsive lncRNAs inArabidopsis thalianaby integrating expression, epigenetic and structural features

(2014) Chao Di et al.   PLANT JOURNAL

Identification of candidate genes for fusarium yellows resistance in Chinese cabbage by differential expression analysis

(2014) Motoki Shimizu et al.   PLANT MOLECULAR BIOLOGY

Heat shock factor HSFB2a involved in gametophyte development of Arabidopsis thaliana and its expression is controlled by a heat-inducible long non-coding antisense RNA

(2014) Markus Wunderlich et al.   PLANT MOLECULAR BIOLOGY

AntisenseCOOLAIRmediates the coordinated switching of chromatin states atFLCduring vernalization

(2014) Tibor Csorba et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light

(2014) Y. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary conservation of cold-induced antisense RNAs of FLOWERING LOCUS C in Arabidopsis thaliana perennial relatives

(2014) Loren Castaings et al.   Nature Communications

Protein-Coding cis-Natural Antisense Transcripts Have High and Broad Expression in Arabidopsis

(2013) S. Zhan et al.   PLANT PHYSIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

(2012) J. Ding et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetics in plants—vernalisation and hybrid vigour

(2011) Michael Groszmann et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Vernalization-Repression of Arabidopsis FLC Requires Promoter Sequences but Not Antisense Transcripts

(2011) Chris A. Helliwell et al.   PLoS One

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

(2010) J. B. Heo et al.   SCIENCE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

(2009) Szymon Swiezewski et al.   NATURE

Mechanisms of gene repression by vernalization in Arabidopsis

(2009) Candice C. Sheldon et al.   PLANT JOURNAL