Comparative analysis of Lactobacillus gasseri from Chinese subjects reveals a new species-level taxa

Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

(2018) Raffael C. Inglin et al.   BMC GENOMICS

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

(2018) David Couvin et al.   NUCLEIC ACIDS RESEARCH

Lactobacillus gasseri SF1183 protects the intestinal epithelium and prevents colitis symptoms in vivo

(2018) B. Di Luccia et al.   Journal of Functional Foods

Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses

(2018) Yasuhiro Tanizawa et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

List of new names and new combinations previously effectively, but not validly, published

(2018) Aharon Oren et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Characterizing the activity of abundant, diverse and active CRISPR-Cas systems in lactobacilli

(2018) Alexandra B. Crawley et al.   Scientific Reports

Characterization and Exploitation of CRISPR Loci in Bifidobacterium longum

(2017) Claudio Hidalgo-Cantabrana et al.   Frontiers in Microbiology

Bacteriocin Gene-Trait matching across the complete Lactobacillus Pan-genome

(2017) Fergus W. J. Collins et al.   Scientific Reports

The Variable Regions ofLactobacillus rhamnosusGenomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires

(2016) Corina Ceapa et al.   Genome Biology and Evolution

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

(2016) Todd M. Lowe et al.   NUCLEIC ACIDS RESEARCH

Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis

(2016) Sabrina Duranti et al.   Scientific Reports

The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract

(2015) Udo Wegmann et al.   BMC GENOMICS

Occurrence and activity of a type II CRISPR-Cas system in Lactobacillus gasseri

(2015)   MICROBIOLOGY-SGM

An updated evolutionary classification of CRISPR–Cas systems

(2015) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera

(2015) Zhihong Sun et al.   Nature Communications

Comparative genomics of the Bifidobacterium breve taxon

(2014) Francesca Bottacini et al.   BMC GENOMICS

Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes

(2014) M. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

BAGEL3: automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides

(2013) Auke J. van Heel et al.   NUCLEIC ACIDS RESEARCH

Lactobacillus paracasei Comparative Genomics: Towards Species Pan-Genome Definition and Exploitation of Diversity

(2013) Tamara Smokvina et al.   PLoS One

Comparative Genomic and Functional Analysis of 100 Lactobacillus rhamnosus Strains and Their Comparison with Strain GG

(2013) François P. Douillard et al.   PLoS Genetics

Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation

(2012) Jeff R Broadbent et al.   BMC GENOMICS

Next generation sequencing and a new era of medicine

(2012) Graham Casey et al.   GUT

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

PGAP: pan-genomes analysis pipeline

(2011) Yongbing Zhao et al.   BIOINFORMATICS

Intranasally administered Lactobacillus gasseri TMC0356 protects mice from H1N1 influenza virus infection by stimulating respiratory immune responses

(2010) Gaku Harata et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Probiotic properties of Lactobacillus isolates originating from porcine intestine and feces

(2009) Tanja Lähteinen et al.   ANAEROBE

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA