Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis

Prophages of the genusBifidobacteriumas modulating agents of the infant gut microbiota

(2016) Gabriele Andrea Lugli et al.   ENVIRONMENTAL MICROBIOLOGY

Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems

(2015) A. O’Callaghan et al.   BMC GENOMICS

Insights from genomes of representatives of the human gut commensalBifidobacterium bifidum

(2015) Sabrina Duranti et al.   ENVIRONMENTAL MICROBIOLOGY

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut

(2015) Christian Milani et al.   Scientific Reports

Discovery of a Conjugative Megaplasmid in Bifidobacterium breve

(2014) Francesca Bottacini et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic Characterization and Transcriptional Studies of the Starch-Utilizing Strain Bifidobacterium adolescentis 22L

(2014) Sabrina Duranti et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic Encyclopedia of Type Strains of the Genus Bifidobacterium

(2014) Christian Milani et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Investigation of the Evolutionary Development of the Genus Bifidobacterium by Comparative Genomics

(2014) Gabriele Andrea Lugli et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genomics of the Bifidobacterium breve taxon

(2014) Francesca Bottacini et al.   BMC GENOMICS

Expression of sortase-dependent pili ofBifidobacterium bifidumPRL2010 in response to environmental gut conditions

(2014) Francesca Turroni et al.   FEMS MICROBIOLOGY LETTERS

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2014) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

Variation in Consumption of Human Milk Oligosaccharides by Infant Gut-Associated Strains of Bifidobacterium breve

(2013) Santiago Ruiz-Moyano et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative Genomics of Bifidobacterium animalis subsp. lactis Reveals a Strict Monophyletic Bifidobacterial Taxon

(2013) C. Milani et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BlastGraph: a comparative genomics tool based on BLAST and graph algorithms

(2013) Yanbo Ye et al.   BIOINFORMATICS

Reclassification of Bifidobacterium stercoris Kim et al. 2010 as a later heterotypic synonym of Bifidobacterium adolescentis

(2013) J. Killer et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

eggNOG v4.0: nested orthology inference across 3686 organisms

(2013) Sean Powell et al.   NUCLEIC ACIDS RESEARCH

Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions

(2013) F. Turroni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of Predicted Carbohydrate Transport Systems Encoded by Bifidobacterium bifidum PRL2010

(2012) Francesca Turroni et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Developing an efficient and reproducible conjugation-based gene transfer system for bifidobacteria

(2012) W. Dominguez et al.   MICROBIOLOGY-SGM

Diversity of Bifidobacteria within the Infant Gut Microbiota

(2012) Francesca Turroni et al.   PLoS One

PGAP: pan-genomes analysis pipeline

(2011) Yongbing Zhao et al.   BIOINFORMATICS

Carbohydrate metabolism in Bifidobacteria

(2011) Karina Pokusaeva et al.   Genes and Nutrition

Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium

(2011) Elena Foroni et al.   Microbial Cell Factories

Identification of Surprisingly Diverse Type IV Pili, across a Broad Range of Gram-Positive Bacteria

(2011) Saheed Imam et al.   PLoS One

Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor

(2011) M. O'Connell Motherway et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Genomics and ecological overview of the genus Bifidobacterium

(2010) Francesca Turroni et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging

(2010) F. Turroni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploring the Diversity of the Bifidobacterial Population in the Human Intestinal Tract

(2009) F. Turroni et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative Analyses of Prophage-Like Elements Present in Bifidobacterial Genomes

(2009) M. Ventura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

annot8r: GO, EC and KEGG annotation of EST datasets

(2008) Ralf Schmid et al.   BMC BIOINFORMATICS

The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

(2008) D. A. Sela et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA