Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: II: carcass merit traits

Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: I: feed efficiency and component traits

(2020) Feng Zhang et al.   BMC GENOMICS

Evaluation of a genomic-enhanced sorting system for feeder cattle1

(2019) Everestus C Akanno et al.   JOURNAL OF ANIMAL SCIENCE

Variance explained by whole genome sequence variants in coding and regulatory genome annotations for six dairy traits

(2018) Lambros T. Koufariotis et al.   BMC GENOMICS

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

(2018) Aniek C. Bouwman et al.   NATURE GENETICS

Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB

(2018) Zhi-Liang Hu et al.   NUCLEIC ACIDS RESEARCH

Phenotypic and genetic correlations of fatty acid composition in subcutaneous adipose tissue with carcass merit and meat tenderness traits in Canadian beef cattle1

(2017) C. Ekine-Dzivenu et al.   JOURNAL OF ANIMAL SCIENCE

Concepts, estimation and interpretation of SNP-based heritability

(2017) Jian Yang et al.   NATURE GENETICS

Genomic prediction for carcass traits in Japanese Black cattle using single nucleotide polymorphism markers of different densities

(2017) Shinichiro Ogawa et al.   Animal Production Science

Functional confirmation of PLAG1 as the candidate causative gene underlying major pleiotropic effects on body weight and milk characteristics

(2017) Tania Fink et al.   Scientific Reports

Loci associated with adult stature also affect calf birth survival in cattle

(2015) Goutam Sahana et al.   BMC GENETICS

Genome-wide association and genomic prediction of breeding values for fatty acid composition in subcutaneous adipose and longissimus lumborum muscle of beef cattle

(2015) Liuhong Chen et al.   BMC GENETICS

Genetic variance estimation with imputed variants finds negligible missing heritability for human height and body mass index

(2015) Jian Yang et al.   NATURE GENETICS

A large and diverse collection of bovine genome sequences from the Canadian Cattle Genome Project

(2015) Paul Stothard et al.   GigaScience

Accuracy of predicting genomic breeding values for carcass merit traits in Angus and Charolais beef cattle

(2014) L. Chen et al.   ANIMAL GENETICS

Regulatory and coding genome regions are enriched for trait associated variants in dairy and beef cattle

(2014) Lambros Koufariotis et al.   BMC GENOMICS

Large-effect pleiotropic or closely linked QTL segregate within and across ten US cattle breeds

(2014) Mahdi Saatchi et al.   BMC GENOMICS

Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle

(2014) Rasmus Brøndum et al.   BMC GENOMICS

A new approach for efficient genotype imputation using information from relatives

(2014) Mehdi Sargolzaei et al.   BMC GENOMICS

Phenotypic and genetic relationships of feeding behavior with feed intake, growth performance, feed efficiency, and carcass merit traits in Angus and Charolais steers1

(2014) L. Chen et al.   JOURNAL OF ANIMAL SCIENCE

Reliability of molecular breeding values for Warner-Bratzler shear force and carcass traits of beef cattle – An independent validation study1

(2014) E. C. Akanno et al.   JOURNAL OF ANIMAL SCIENCE

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

Advantages and pitfalls in the application of mixed-model association methods

(2014) Jian Yang et al.   NATURE GENETICS

Genome-wide association analyses for carcass quality in crossbred beef cattle

(2013) Duc Lu et al.   BMC GENETICS

Accuracy of predicting genomic breeding values for residual feed intake in Angus and Charolais beef cattle1

(2013) L. Chen et al.   JOURNAL OF ANIMAL SCIENCE

Phenotypic and genetic relationships of feed efficiency with growth performance, ultrasound, and carcass merit traits in Angus and Charolais steers1

(2013) F. Mao et al.   JOURNAL OF ANIMAL SCIENCE

Residual feed intake adjusted for backfat thickness and feeding frequency is independent of fertility in beef heifers

(2012) J. A. Basarab et al.   CANADIAN JOURNAL OF ANIMAL SCIENCE

Design of a Bovine Low-Density SNP Array Optimized for Imputation

(2012) Didier Boichard et al.   PLoS One

An expanded family of arrestins regulate metabolism

(2012) Parth Patwari et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Linkage disequilibrium in Angus, Charolais, and Crossbred beef cattle

(2012) Duc Lu et al.   Frontiers in Genetics

Estimating Missing Heritability for Disease from Genome-wide Association Studies

(2011) Sang Hong Lee et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The SNP c.1326T>G in the non-SMC condensin I complex, subunit G (NCAPG) gene encoding a p.Ile442Met variant is associated with an increase in body frame size at puberty in cattle

(2011) K. Setoguchi et al.   ANIMAL GENETICS

In-depth annotation of SNPs arising from resequencing projects using NGS-SNP

(2011) J. R. Grant et al.   BIOINFORMATICS

Extension of the bayesian alphabet for genomic selection

(2011) David Habier et al.   BMC BIOINFORMATICS

Association, effects and validation of polymorphisms within the NCAPG - LCORL locus located on BTA6 with feed intake, gain, meat and carcass traits in beef cattle

(2011) Amanda K Lindholm-Perry et al.   BMC GENETICS

The Arrestin Domain-Containing 3 Protein Regulates Body Mass and Energy Expenditure

(2011) Parth Patwari et al.   Cell Metabolism

PHYSIOLOGY AND ENDOCRINOLOGY SYMPOSIUM: How single nucleotide polymorphism chips will advance our knowledge of factors controlling puberty and aid in selecting replacement beef females1,2,3,4

(2011) W. M. Snelling et al.   JOURNAL OF ANIMAL SCIENCE

Variants modulating the expression of a chromosome domain encompassing PLAG1 influence bovine stature

(2011) Latifa Karim et al.   NATURE GENETICS

Genome partitioning of genetic variation for complex traits using common SNPs

(2011) Jian Yang et al.   NATURE GENETICS

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Cross-breed comparisons identified a critical 591-kb region for bovine carcass weight QTL (CW-2) on chromosome 6 and the Ile-442-Met substitution in NCAPG as a positional candidate

(2009) Kouji Setoguchi et al.   BMC GENETICS

Dissection of Genetic Factors Modulating Fetal Growth in Cattle Indicates a Substantial Role of the Non-SMC Condensin I Complex, Subunit G (NCAPG) Gene

(2009) A. Eberlein et al.   GENETICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Mapping genes for complex traits in domestic animals and their use in breeding programmes

(2009) Michael E. Goddard et al.   NATURE REVIEWS GENETICS

Biological basis for restriction of microRNA targets to the 3′ untranslated region in mammalian mRNAs

(2009) Shuo Gu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Development and Characterization of a High Density SNP Genotyping Assay for Cattle

(2009) Lakshmi K. Matukumalli et al.   PLoS One

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE