Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: I: feed efficiency and component traits

Variance explained by whole genome sequence variants in coding and regulatory genome annotations for six dairy traits

(2018) Lambros T. Koufariotis et al.   BMC GENOMICS

Transcriptome analyses reveal reduced hepatic lipid synthesis and accumulation in more feed efficient beef cattle

(2018) Robert Mukiibi et al.   Scientific Reports

Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB

(2018) Zhi-Liang Hu et al.   NUCLEIC ACIDS RESEARCH

Beef steers with average dry matter intake and divergent average daily gain have altered gene expression in the jejunum

(2017) A. P. Foote et al.   JOURNAL OF ANIMAL SCIENCE

Concepts, estimation and interpretation of SNP-based heritability

(2017) Jian Yang et al.   NATURE GENETICS

Imputation-Based Whole-Genome Sequence Association Study Rediscovered the Missing QTL for Lumbar Number in Sutai Pigs

(2017) Guorong Yan et al.   Scientific Reports

Genotype Imputation with Millions of Reference Samples

(2016) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Accuracy of genomic predictions for feed efficiency traits of beef cattle using 50K and imputed HD genotypes1

(2016) D. Lu et al.   JOURNAL OF ANIMAL SCIENCE

The roles of RNA processing in translating genotype to phenotype

(2016) Kassie S. Manning et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Multi-strategy genome-wide association studies identify the DCAF16-NCAPG region as a susceptibility locus for average daily gain in cattle

(2016) Wengang Zhang et al.   Scientific Reports

Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake

(2016) Polyana C. Tizioto et al.   Scientific Reports

Genome-wide association and genomic prediction of breeding values for fatty acid composition in subcutaneous adipose and longissimus lumborum muscle of beef cattle

(2015) Liuhong Chen et al.   BMC GENETICS

Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle

(2015) Pamela A. Alexandre et al.   BMC GENOMICS

Emerging role of PLAG1 as a regulator of growth and reproduction

(2015) Almas R Juma et al.   JOURNAL OF ENDOCRINOLOGY

Genetic variance estimation with imputed variants finds negligible missing heritability for human height and body mass index

(2015) Jian Yang et al.   NATURE GENETICS

A large and diverse collection of bovine genome sequences from the Canadian Cattle Genome Project

(2015) Paul Stothard et al.   GigaScience

Accuracy of predicting genomic breeding values for carcass merit traits in Angus and Charolais beef cattle

(2014) L. Chen et al.   ANIMAL GENETICS

Regulatory and coding genome regions are enriched for trait associated variants in dairy and beef cattle

(2014) Lambros Koufariotis et al.   BMC GENOMICS

Large-effect pleiotropic or closely linked QTL segregate within and across ten US cattle breeds

(2014) Mahdi Saatchi et al.   BMC GENOMICS

QTLs associated with dry matter intake, metabolic mid-test weight, growth and feed efficiency have little overlap across 4 beef cattle studies

(2014) Mahdi Saatchi et al.   BMC GENOMICS

A new approach for efficient genotype imputation using information from relatives

(2014) Mehdi Sargolzaei et al.   BMC GENOMICS

Estimation of genomic breeding values for residual feed intake in a multibreed cattle population1

(2014) M. Khansefid et al.   JOURNAL OF ANIMAL SCIENCE

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

Advantages and pitfalls in the application of mixed-model association methods

(2014) Jian Yang et al.   NATURE GENETICS

Accuracy of predicting genomic breeding values for residual feed intake in Angus and Charolais beef cattle1

(2013) L. Chen et al.   JOURNAL OF ANIMAL SCIENCE

Phenotypic and genetic relationships of feed efficiency with growth performance, ultrasound, and carcass merit traits in Angus and Charolais steers1

(2013) F. Mao et al.   JOURNAL OF ANIMAL SCIENCE

Genome-wide association analyses for growth and feed efficiency traits in beef cattle1

(2013) D. Lu et al.   JOURNAL OF ANIMAL SCIENCE

Methane emissions, body composition, and rumen fermentation traits of beef heifers differing in residual feed intake1

(2013) C. Fitzsimons et al.   JOURNAL OF ANIMAL SCIENCE

Adipose and Muscle Tissue Gene Expression of Two Genes (NCAPG and LCORL) Located in a Chromosomal Region Associated with Cattle Feed Intake and Gain

(2013) Amanda K. Lindholm-Perry et al.   PLoS One

Residual feed intake adjusted for backfat thickness and feeding frequency is independent of fertility in beef heifers

(2012) J. A. Basarab et al.   CANADIAN JOURNAL OF ANIMAL SCIENCE

Linkage disequilibrium in Angus, Charolais, and Crossbred beef cattle

(2012) Duc Lu et al.   Frontiers in Genetics

Estimating Missing Heritability for Disease from Genome-wide Association Studies

(2011) Sang Hong Lee et al.   AMERICAN JOURNAL OF HUMAN GENETICS

In-depth annotation of SNPs arising from resequencing projects using NGS-SNP

(2011) J. R. Grant et al.   BIOINFORMATICS

Association, effects and validation of polymorphisms within the NCAPG - LCORL locus located on BTA6 with feed intake, gain, meat and carcass traits in beef cattle

(2011) Amanda K Lindholm-Perry et al.   BMC GENETICS

Partial-genome evaluation of postweaning feed intake and efficiency of crossbred beef cattle1,2

(2011) W. M. Snelling et al.   JOURNAL OF ANIMAL SCIENCE

Genome partitioning of genetic variation for complex traits using common SNPs

(2011) Jian Yang et al.   NATURE GENETICS

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

STC2: A Predictive Marker for Lymph Node Metastasis in Esophageal Squamous-Cell Carcinoma

(2010) Yoshiaki Kita et al.   ANNALS OF SURGICAL ONCOLOGY

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Genotype imputation for genome-wide association studies

(2010) Jonathan Marchini et al.   NATURE REVIEWS GENETICS

Cross-breed comparisons identified a critical 591-kb region for bovine carcass weight QTL (CW-2) on chromosome 6 and the Ile-442-Met substitution in NCAPG as a positional candidate

(2009) Kouji Setoguchi et al.   BMC GENETICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Phenotypic and genetic parameters for different measures of feed efficiency in different breeds of Irish performance-tested beef bulls

(2009) J. J. Crowley et al.   JOURNAL OF ANIMAL SCIENCE

Biological basis for restriction of microRNA targets to the 3′ untranslated region in mammalian mRNAs

(2009) Shuo Gu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

(2009) Bryan N. Howie et al.   PLoS Genetics

The Murine Stanniocalcin 2 Gene Is a Negative Regulator of Postnatal Growth

(2008) Andy C.-M. Chang et al.   ENDOCRINOLOGY

Missing data imputation and haplotype phase inference for genome-wide association studies

(2008) Sharon R. Browning   HUMAN GENETICS

Physiological basis for residual feed intake1

(2008) R. M. Herd et al.   JOURNAL OF ANIMAL SCIENCE

Endoplasmic Reticulum Stress Markers Are Associated with Obesity in Nondiabetic Subjects

(2008) Neeraj K. Sharma et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM