X-ray computed tomography in life sciences

Deep learning for image analysis: Personalizing medicine closer to the point of care

(2019) Quin Xie et al.   CRITICAL REVIEWS IN CLINICAL LABORATORY SCIENCES

3D vessel-wall virtual histology of whole-body perfused mice using a novel heavy element stain

(2019) P. Joy Dunmore-Buyze et al.   Scientific Reports

Prevalence of hepatitis E infection in HIV/HCV-coinfected patients in Spain (2012–2014)

(2019) Sonia Vázquez-Morón et al.   Scientific Reports

Evaluation of X-ray tomography contrast agents: A review of production, protocols, and biological applications

(2019) Mümin Mehmet Koç et al.   MICROSCOPY RESEARCH AND TECHNIQUE

Synchrotron tomography of intervertebral disc deformation quantified by digital volume correlation reveals microstructural influence on strain patterns

(2019) C.M. Disney et al.   Acta Biomaterialia

Completing the picture through correlative characterization

(2019) T. L. Burnett et al.   NATURE MATERIALS

Experimental steering of electron microscopy studies using prior X-ray computed tomography

(2019) Tobias Starborg et al.   ULTRAMICROSCOPY

Macro-to-nanoscale investigation of wall-plate joints in the acorn barnacle Semibalanus balanoides : correlative imaging, biological form and function, and bioinspiration

(2019) R. L. Mitchell et al.   Journal of the Royal Society Interface

Optimization of image quality and acquisition time for lab-based X-ray microtomography using an iterative reconstruction algorithm

(2018) Qingyang Lin et al.   ADVANCES IN WATER RESOURCES

Element-specific spectral imaging of multiple contrast agents: a phantom study

(2018) R.K. Panta et al.   Journal of Instrumentation

X-ray phase-contrast imaging

(2018) Marco Endrizzi   NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT

How much is too much?—Influence of X-ray dose on root growth of faba bean (Vicia faba) and barley (Hordeum vulgare)

(2018) Sebastian R. G. A. Blaser et al.   PLoS One

Three-dimensional virtual histology of human cerebellum by X-ray phase-contrast tomography

(2018) Mareike Töpperwien et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

3D Maps of Mineral Composition and Hydroxyapatite Orientation in Fossil Bone Samples Obtained by X-ray Diffraction Computed Tomography

(2018) Fredrik K. Mürer et al.   Scientific Reports

3D Imaging and Quantitative Analysis of Vascular Networks: A Comparison of Ultramicroscopy and Micro-Computed Tomography

(2018) Jeremy Epah et al.   Theranostics

Effect of SR-microCT radiation on the mechanical integrity of trabecular bone using in situ mechanical testing and digital volume correlation

(2018) Marta Peña Fernández et al.   Journal of the Mechanical Behavior of Biomedical Materials

Serial block face scanning electron microscopy in cell biology: Applications and technology

(2018) David Smith et al.   TISSUE & CELL

Four-Dimensional Imaging of Soft Tissue and Implanted Biomaterial Mechanics: A Barbed Suture Case Study for Tendon Repair

(2018) Shelley D. Rawson et al.   ACS Applied Materials & Interfaces

Medical Image Analysis using Convolutional Neural Networks: A Review

(2018) Syed Muhammad Anwar et al.   JOURNAL OF MEDICAL SYSTEMS

Mass-transfer based modeling to investigate iodine staining effects for enhanced contrast X-ray computed tomography

(2018) Zhi-Heng Li et al.   Palaeoworld

Micro-Computed Tomography Detection of Gold Nanoparticle-Labelled Mesenchymal Stem Cells in the Rat Subretinal Layer

(2017) Pooi Mok et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Nondestructive cryomicro-CT imaging enables structural and molecular analysis of human lung tissue

(2017) Dragoş M. Vasilescu et al.   JOURNAL OF APPLIED PHYSIOLOGY

Novel computed tomography-based tools reliably quantify plant reproductive investment

(2017) Y M Staedler et al.   JOURNAL OF EXPERIMENTAL BOTANY

Microscopic dual-energy CT (microDECT): a flexible tool for multichannel ex vivo 3D imaging of biological specimens

(2017) S. HANDSCHUH et al.   JOURNAL OF MICROSCOPY

Short bursts of cyclic mechanical compression modulate tissue formation in a 3D hybrid scaffold

(2017) M. Brunelli et al.   Journal of the Mechanical Behavior of Biomedical Materials

Quantitative characterization of degradation processes in situ by means of a bioreactor coupled flow chamber under physiological conditions using time-lapse SRµCT

(2017) Berit Zeller-Plumhoff et al.   MATERIALS AND CORROSION-WERKSTOFFE UND KORROSION

A guide to light-sheet fluorescence microscopy for multiscale imaging

(2017) Rory M Power et al.   NATURE METHODS

X-ray micro-computed tomography (μCT): an emerging opportunity in parasite imaging

(2017) James D. B. O'Sullivan et al.   PARASITOLOGY

Traditional Invasive and Synchrotron-Based Noninvasive Assessments of Three-Dimensional-Printed Hybrid Cartilage Constructs In Situ

(2017) Adeola D. Olubamiji et al.   TISSUE ENGINEERING PART C-METHODS

Visualising the 3D microstructure of stained and native intervertebral discs using X-ray microtomography

(2017) C. M. Disney et al.   Scientific Reports

A study of the progression of damage in an axially loaded Branta leucopsis femur using X-ray computed tomography and digital image correlation

(2017) Zartasha Mustansar et al.   PeerJ

Simultaneous visualisation of calcified bone microstructure and intracortical vasculature using synchrotron X-ray phase contrast-enhanced tomography

(2017) Juan A. Núñez et al.   Scientific Reports

Dual-energy micro-CT for quantifying the time-course and staining characteristics of ex-vivo animal organs treated with iodine- and gadolinium-based contrast agents

(2017) Juliana Martins de Souza e Silva et al.   Scientific Reports

The emergent rhizosphere: imaging the development of the porous architecture at the root-soil interface

(2017) J. R. Helliwell et al.   Scientific Reports

Labeling monocytes with gold nanoparticles to track their recruitment in atherosclerosis with computed tomography

(2016) Peter Chhour et al.   BIOMATERIALS

The use of contrast enhancement techniques in X-ray imaging of lithium–ion battery electrodes

(2016) Oluwadamilola O. Taiwo et al.   CHEMICAL ENGINEERING SCIENCE

Post-processing techniques for making reliable measurements from curve-skeletons

(2016) Robert S. Bradley et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Effects of γ-Fe2O3 nanoparticles on the survival and reproduction of Biomphalaria glabrata (Say, 1818) and their elimination from this benthic aquatic snail

(2016) Eduardo C. Oliveira-Filho et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Diffusible iodine-based contrast-enhanced computed tomography (diceCT): an emerging tool for rapid, high-resolution, 3-D imaging of metazoan soft tissues

(2016) Paul M. Gignac et al.   JOURNAL OF ANATOMY

Three-dimensional visualisation of soft biological structures by X-ray computed micro-tomography

(2016) Tom Shearer et al.   JOURNAL OF CELL SCIENCE

Comparison and Evaluation of the Effectiveness of Two Approaches of Diffusible Iodine-Based Contrast-Enhanced Computed Tomography (diceCT) for Avian Cephalic Material

(2016) ZHIHENG LI et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

3D X-Ray Nanotomography of Cells Grown on Electrospun Scaffolds

(2016) Robert S. Bradley et al.   MACROMOLECULAR BIOSCIENCE

Large volume serial section tomography by Xe Plasma FIB dual beam microscopy

(2016) T.L. Burnett et al.   ULTRAMICROSCOPY

Effect of X-ray irradiation on ancient DNA in sub-fossil bones – Guidelines for safe X-ray imaging

(2016) Alexander Immel et al.   Scientific Reports

Nanomedicine for Cancer Immunotherapy: Tracking Cancer-Specific T-Cells in Vivo with Gold Nanoparticles and CT Imaging

(2015) Rinat Meir et al.   ACS Nano

Optical tomography complements light sheet microscopy for in toto imaging of zebrafish development

(2015) A. Bassi et al.   DEVELOPMENT

Analysis of ER-mitochondria contacts using correlative fluorescence microscopy and soft X-ray tomography of mammalian cells

(2015) K. D. Elgass et al.   JOURNAL OF CELL SCIENCE

Three-dimensional mass density mapping of cellular ultrastructure by ptychographic X-ray nanotomography

(2015) Ana Diaz et al.   JOURNAL OF STRUCTURAL BIOLOGY

Myelinated mouse nerves studied by X-ray phase contrast zoom tomography

(2015) M. Bartels et al.   JOURNAL OF STRUCTURAL BIOLOGY

Factors influencing real time internal structural visualization and dynamic process monitoring in plants using synchrotron-based phase contrast X-ray imaging

(2015) Chithra Karunakaran et al.   Scientific Reports

3D chemical imaging in the laboratory by hyperspectral X-ray computed tomography

(2015) C. K. Egan et al.   Scientific Reports

In-vitro Optimization of Nanoparticle-Cell Labeling Protocols for In-vivo Cell Tracking Applications

(2015) Oshra Betzer et al.   Scientific Reports

Morphological Characterisation of Unstained and Intact Tissue Micro-architecture by X-ray Computed Micro- and Nano-Tomography

(2015) Lucy A. Walton et al.   Scientific Reports

Phase-contrast zoom tomography reveals precise locations of macrophages in mouse lungs

(2015) Martin Krenkel et al.   Scientific Reports

A structure-based extracellular matrix expansion mechanism of fibrous tissue growth

(2015) Nicholas S Kalson et al.   eLife

The Site and Nature of Airway Obstruction after Lung Transplantation

(2014) Stijn E. Verleden et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Iodine-enhanced micro-CT imaging: Methodological refinements for the study of the soft-tissue anatomy of post-embryonic vertebrates

(2014) Paul M. Gignac et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Volume Shrinkage of Bone, Brain and Muscle Tissue in Sample Preparation for Micro-CT and Light Sheet Fluorescence Microscopy (LSFM)

(2014) Jan Buytaert et al.   MICROSCOPY AND MICROANALYSIS

A simple way to track single gold-loaded alginate microcapsules using x-ray CT in small animal longitudinal studies

(2014) Alberto Astolfo et al.   Nanomedicine-Nanotechnology Biology and Medicine

Optimal Iodine Staining of Cardiac Tissue for X-Ray Computed Tomography

(2014) Timothy D. Butters et al.   PLoS One

Quantitative X-ray tomography

(2013) E. Maire et al.   INTERNATIONAL MATERIALS REVIEWS

Concentration-dependent specimen shrinkage in iodine-enhanced microCT

(2013) Paula Vickerton et al.   JOURNAL OF ANATOMY

MicroCT versus sTSLIM 3D Imaging of the Mouse Cochlea

(2013) Jan A.N. Buytaert et al.   JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY

An exploratory study of contrast agents for soft tissue visualization by means of high resolution X-ray computed tomography imaging

(2013) E. PAUWELS et al.   JOURNAL OF MICROSCOPY

Laboratory-Based Cryogenic Soft X-Ray Tomography with Correlative Cryo-Light and Electron Microscopy

(2013) David B. Carlson et al.   MICROSCOPY AND MICROANALYSIS

Local Mechanical Stimuli Regulate Bone Formation and Resorption in Mice at the Tissue Level

(2013) Friederike A. Schulte et al.   PLoS One

Effects of X-Ray Dose On Rhizosphere Studies Using X-Ray Computed Tomography

(2013) Susan Zappala et al.   PLoS One

Histological and Micro-CT Evidence of Stigmatic Rostellum Receptivity Promoting Auto-Pollination in the Madagascan Orchid Bulbophyllum bicoloratum

(2013) Alexander Gamisch et al.   PLoS One

In-vivo dark-field and phase-contrast x-ray imaging

(2013) M. Bech et al.   Scientific Reports

Dual-Energy CT: General Principles

(2012) Thorsten R. C. Johnson   AMERICAN JOURNAL OF ROENTGENOLOGY

Cryo X-ray microscope with flat sample geometry for correlative fluorescence and nanoscale tomographic imaging

(2012) Gerd Schneider et al.   JOURNAL OF STRUCTURAL BIOLOGY

Imaging of articular cartilage – Data matching using X-ray tomography, SEM, FIB slicing and conventional histology

(2012) Rolf Zehbe et al.   MICRON

X-Ray Phase Nanotomography Resolves the 3D Human Bone Ultrastructure

(2012) Max Langer et al.   PLoS One

CYTOTOXICITY AND DIFFERENTIATION EFFECTS OF GOLD NANOPARTICLES TO HUMAN BONE MARROW MESENCHYMAL STEM CELLS

(2011) Jui-Hung Fan et al.   Biomedical Engineering - Applications, Basis and Communications

Deep and fast live imaging with two-photon scanned light-sheet microscopy

(2011) Thai V Truong et al.   NATURE METHODS

SEM sample preparation for cells on 3D scaffolds by freeze-drying and HMDS

(2011) Juliana Tsz Yan Lee et al.   SCANNING

A Genetically Encoded Tag for Correlated Light and Electron Microscopy of Intact Cells, Tissues, and Organisms

(2011) Xiaokun Shu et al.   PLOS BIOLOGY

Region-of-interest tomography using filtered backprojection: assessing the practical limits

(2010) A. KYRIELEIS et al.   JOURNAL OF MICROSCOPY

Phase-contrast tomography at the nanoscale using hard x rays

(2010) Marco Stampanoni et al.   PHYSICAL REVIEW B

Quantitative analysis of yeast internal architecture using soft X-ray tomography

(2010) Maho Uchida et al.   YEAST

X-ray phase contrast imaging of the bone–cartilage interface

(2009) Elna Che Ismail et al.   APPLIED RADIATION AND ISOTOPES

X-ray microcomputed tomography for the measurement of cell adhesionand proliferation in polymer scaffolds

(2009) Shauna M. Dorsey et al.   BIOMATERIALS

MicroCT for developmental biology: A versatile tool for high-contrast 3D imaging at histological resolutions

(2009) Brian D. Metscher   DEVELOPMENTAL DYNAMICS

Metal-related artifacts in instrumented spine. Techniques for reducing artifacts in CT and MRI: state of the art

(2009) P. Stradiotti et al.   EUROPEAN SPINE JOURNAL

Soft X-ray tomography and cryogenic light microscopy: the cool combination in cellular imaging

(2009) Gerry McDermott et al.   TRENDS IN CELL BIOLOGY

Gold Nanoparticles in Biology: Beyond Toxicity to Cellular Imaging

(2008) Catherine J. Murphy et al.   ACCOUNTS OF CHEMICAL RESEARCH

Altered morphology and 3D architecture of brain vasculature in a mouse model for Alzheimer's disease

(2008) E. P. Meyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA