Extensive paraphyly in the typical owl family (Strigidae)

Earth history and the passerine superradiation

(2019) Carl H. Oliveros et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

More than skin and bones: Comparing extraction methods and alternative sources of DNA from avian museum specimens

(2019) Whitney L. E. Tsai et al.   Molecular Ecology Resources

Species delimitation within the Glaucidium brodiei owlet complex using bioacoustic tools

(2019) Chyi Yin Gwee et al.   Avian Research

The critically endangered forest owlet Heteroglaux blewitti is nested within the currently recognized Athene clade: A century-old debate addressed

(2018) Pankaj Koparde et al.   PLoS One

Species tree estimation using ASTRAL: how many genes are enough?

(2017) Shubhanshu Shekhar et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Fragmentary Gene Sequences Negatively Impact Gene Tree and Species Tree Reconstruction

(2017) Erfan Sayyari et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bioacoustic and multi-locus DNA data of Ninox owls support high incidence of extinction and recolonisation on small, low-lying islands across Wallacea

(2017) Chyi Yin Gwee et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats

(2017) Roy N Platt et al.   SYSTEMATIC BIOLOGY

Hidden histories of gene flow in highland birds revealed with genomic markers

(2016) Eugenia Zarza et al.   MOLECULAR ECOLOGY

Molecular systematics of the new world screech-owls ( Megascops : Aves, Strigidae): biogeographic and taxonomic implications

(2016) Sidnei M. Dantas et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Predictable evolution toward flightlessness in volant island birds

(2016) Natalie A. Wright et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tectonic collision and uplift of Wallacea triggered the global songbird radiation

(2016) Robert G. Moyle et al.   Nature Communications

ExaML version 3: a tool for phylogenomic analyses on supercomputers

(2015) Alexey M. Kozlov et al.   BIOINFORMATICS

PHYLUCE is a software package for the analysis of conserved genomic loci

(2015) Brant C. Faircloth   BIOINFORMATICS

Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes)

(2015) Peter A. Hosner et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sequence capture of ultraconserved elements from bird museum specimens

(2015) John E. McCormack et al.   Molecular Ecology Resources

On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods

(2015) Sebastien Roch et al.   SYSTEMATIC BIOLOGY

Ultraconserved Elements Sequencing as a Low-Cost Source of Complete Mitochondrial Genomes and Microsatellite Markers in Non-Model Amniotes

(2015) Fábio Raposo do Amaral et al.   PLoS One

Quartet Inference from SNP Data Under the Coalescent Model

(2014) Julia Chifman et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Selecting optimal partitioning schemes for phylogenomic datasets

(2014) Robert Lanfear et al.   BMC EVOLUTIONARY BIOLOGY

ExaBayes: Massively Parallel Bayesian Tree Inference for the Whole-Genome Era

(2014) Andre J. Aberer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Silent Owl Flight: Comparative Acoustic Wind Tunnel Measurements on Prepared Wings

(2013) Thomas Geyer et al.   ACTA ACUSTICA UNITED WITH ACUSTICA

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

Insular avian adaptations on two Neotropical continental islands

(2012) Natalie A. Wright et al.   JOURNAL OF BIOGEOGRAPHY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Mitochondrial genomes gleaned from human whole-exome sequencing

(2012) Ernesto Picardi et al.   NATURE METHODS

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

(2012) Brant C. Faircloth et al.   SYSTEMATIC BIOLOGY

Silent Owl Flight: Bird Flyover Noise Measurements

(2011) Ennes Sarradj et al.   AIAA JOURNAL

Molecular Phylogeny of Owls (Strigiformes) Inferred from DNA Sequences of the Mitochondrial Cytochromeband the NuclearRAG-1gene

(2011) Michael Wink et al.   ARDEA

Quartet MaxCut: A fast algorithm for amalgamating quartet trees

(2011) Sagi Snir et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Error and Error Mitigation in Low-Coverage Genome Assemblies

(2011) Melissa J. Hubisz et al.   PLoS One

Phylogeny and Taxonomic Review of Philippine Lowland Scops Owls (Strigiformes): Parallel Diversification of Highland and Lowland Clades

(2011) Hector C. Miranda et al.   Wilson Journal of Ornithology

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information

(2010) Gaurav Vaidya et al.   CLADISTICS

Convergent Evolution of Hawaiian and Australo-Pacific Honeyeaters from Distant Songbird Ancestors

(2008) Robert C. Fleischer et al.   CURRENT BIOLOGY

Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data

(2008) T.-K. Seo   MOLECULAR BIOLOGY AND EVOLUTION

Clarifying the systematics of an enigmatic avian lineage: What is a bombycillid?

(2008) G SPELLMAN et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH