Biodegradation of naphthenic acids: identification of Rhodococcus opacus R7 genes as molecular markers for environmental monitoring and their application in slurry microcosms

Aerobic Growth of Rhodococcus aetherivorans BCP1 Using Selected Naphthenic Acids as the Sole Carbon and Energy Sources

(2018) Alessandro Presentato et al.   Frontiers in Microbiology

Genome-based analysis for the identification of genes involved in o-xylene degradation in Rhodococcus opacus R7

(2018) Alessandra Di Canito et al.   BMC GENOMICS

Effects of environmental conditions on aerobic degradation of a commercial naphthenic acid

(2016) Ciera M. Kinley et al.   CHEMOSPHERE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Phenotype microarray analysis may unravel genetic determinants of the stress response by Rhodococcus aetherivorans BCP1 and Rhodococcus opacus R7

(2016) Martina Cappelletti et al.   RESEARCH IN MICROBIOLOGY

Oil sands naphthenic acids: A review of properties, measurement, and treatment

(2015) Lisa D. Brown et al.   CHEMOSPHERE

Culturing oil sands microbes as mixed species communities enhances ex situ model naphthenic acid degradation

(2015) Marc A. Demeter et al.   Frontiers in Microbiology

Genome Sequence Analysis of the Naphthenic Acid Degrading and Metal Resistant Bacterium Cupriavidus gilardii CR3

(2015) Xiaoyu Wang et al.   PLoS One

Genome and Phenotype Microarray Analyses of Rhodococcus sp. BCP1 and Rhodococcus opacus R7: Genetic Determinants and Metabolic Abilities with Environmental Relevance

(2015) Alessandro Orro et al.   PLoS One

Effects of polycyclic aromatic hydrocarbons on microbial community structure and PAH ring hydroxylating dioxygenase gene abundance in soil

(2014) Przemyslaw Sawulski et al.   BIODEGRADATION

Gene redundancy of two-component (chloro)phenol hydroxylases inRhodococcus opacus1CP

(2014) Janosch A.D. Gröning et al.   FEMS MICROBIOLOGY LETTERS

Harnessing oil sands microbial communities for use in ex situ naphthenic acid bioremediation

(2013) Marc A. Demeter et al.   CHEMOSPHERE

Naphthenic acids degradation and toxicity mitigation in tailings wastewater systems and aquatic environments: A review

(2013) Prakash R. Kannel et al.   JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART A-TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING

Specific Gene Responses of Rhodococcus jostii RHA1 during Growth in Soil

(2012) Toju Iino et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Degradation and aquatic toxicity of naphthenic acids in oil sands process-affected waters using simulated wetlands

(2012) Navdeep S. Toor et al.   CHEMOSPHERE

Biodegradation of alkyl branched aromatic alkanoic naphthenic acids by Pseudomonas putida KT2440

(2012) Richard J. Johnson et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Degradation of 3-Phenoxybenzoic Acid by a Bacillus sp

(2012) Shaohua Chen et al.   PLoS One

Use of functional gene arrays for elucidating in situ biodegradation

(2012) Joy D. Van Nostrand et al.   Frontiers in Microbiology

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Identification and characterization of genes involved in naphthalene degradation in Rhodococcus opacus R7

(2010) Patrizia Di Gennaro et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial biodegradation of aromatic alkanoic naphthenic acids is affected by the degree of alkyl side chain branching

(2010) Richard J Johnson et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Dynamic changes in bacterial community structure and in naphthalene dioxygenase expression in vermicompost-amended PAH-contaminated soils

(2009) Patrizia Di Gennaro et al.   JOURNAL OF HAZARDOUS MATERIALS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Influence of Molecular Structure on the Biodegradability of Naphthenic Acids

(2008) Xiumei Han et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY