Assessing selection signatures within and between selected lines of dual‐purpose black and white and German Holstein cattle

Phenotypic relationships, genetic parameters, genome-wide associations, and identification of potential candidate genes for ketosis and fat-to-protein ratio in German Holstein cows

(2019) S.-L. Klein et al.   JOURNAL OF DAIRY SCIENCE

Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle

(2018) Zexi Cai et al.   BMC GENETICS

Heritabilities and genetic correlations in the same traits across different strata of herds created according to continuous genomic, genetic, and phenotypic descriptors

(2018) Tong Yin et al.   JOURNAL OF DAIRY SCIENCE

Genome-wide association study of milk fatty acid composition in Italian Simmental and Italian Holstein cows using single nucleotide polymorphism arrays

(2018) V. Palombo et al.   JOURNAL OF DAIRY SCIENCE

Assessing genetic architecture and signatures of selection of dual purpose Gir cattle populations using genomic information

(2018) Amanda Marchi Maiorano et al.   PLoS One

Genome-wide search for signatures of selection in three major Brazilian locally adapted sheep breeds

(2017) João José de Simoni Gouveia et al.   Livestock Science

Current insights into the molecular genetic basis of dwarfism in livestock

(2017) Iris J.M. Boegheim et al.   VETERINARY JOURNAL

Network Analysis Reveals Putative Genes Affecting Meat Quality in Angus Cattle

(2017) Raluca G. Mateescu et al.   Frontiers in Genetics

MicroRNA roles in signalling during lactation: an insight from differential expression, time course and pathway analyses of deep sequence data

(2017) Duy N. Do et al.   Scientific Reports

Differential gene expression in the duodenum, jejunum and ileum among crossbred beef steers with divergent gain and feed intake phenotypes

(2016) A. K. Lindholm-Perry et al.   ANIMAL GENETICS

Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

(2016) Bart Buitenhuis et al.   BMC GENETICS

Detection of quantitative trait loci for maternal traits using high-density genotypes of Blonde d’Aquitaine beef cattle

(2016) Alexis Michenet et al.   BMC GENETICS

Claw disorders in dairy cattle – an unexpected association between energy metabolism and sole haemorrhages

(2016) Katrin Wilhelm et al.   JOURNAL OF DAIRY RESEARCH

Association analysis for feet and legs disorders with whole-genome sequence variants in 3 dairy cattle breeds

(2016) Xiaoping Wu et al.   JOURNAL OF DAIRY SCIENCE

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Multiple functions of USP18

(2016) Nadine Honke et al.   Cell Death & Disease

Deriving Gene Networks from SNP Associated with Triacylglycerol and Phospholipid Fatty Acid Fractions from Ribeyes of Angus Cattle

(2016) Justin W. Buchanan et al.   Frontiers in Genetics

Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle

(2016) Ana F. B. Magalhães et al.   PLoS One

RNA-Seq reveals 10 novel promising candidate genes affecting milk protein concentration in the Chinese Holstein population

(2016) Cong Li et al.   Scientific Reports

Properties of different selection signature statistics and a new strategy for combining them

(2015) Y Ma et al.   HEREDITY

Genome-wide association study for claw disorders and trimming status in dairy cattle

(2015) D. van der Spek et al.   JOURNAL OF DAIRY SCIENCE

Clock circadian regulator (CLOCK) gene network expression patterns in bovine adipose, liver, and mammary gland at 3 time points during the transition from pregnancy into lactation

(2015) M. Wang et al.   JOURNAL OF DAIRY SCIENCE

Transcriptomic analysis to elucidate the molecular mechanisms that underlie feed efficiency in meat-type chickens

(2015) Jeeyoung Lee et al.   MOLECULAR GENETICS AND GENOMICS

Trypanosomosis: potential driver of selection in African cattle

(2015) Anamarija Smetko et al.   Frontiers in Genetics

Digital Dermatitis in Cattle: Current Bacterial and Immunological Findings

(2015) Jennifer Wilson-Welder et al.   Animals

A genome-wide scan for signatures of selection in Chinese indigenous and commercial pig breeds

(2014) Songbai Yang et al.   BMC GENETICS

Genome-wide association study for intramuscular fat deposition and composition in Nellore cattle

(2014) Aline SM Cesar et al.   BMC GENETICS

The genetics of fat distribution

(2014) Dorit Schleinitz et al.   DIABETOLOGIA

Deciphering the Genetic Blueprint behind Holstein Milk Proteins and Production

(2014) Hyun-Jeong Lee et al.   Genome Biology and Evolution

Short communication: Genotyping of cows to speed up availability of genomic estimated breeding values for direct health traits in Austrian Fleckvieh (Simmental) cattle—Genetic and economic aspects

(2014) C. Egger-Danner et al.   JOURNAL OF DAIRY SCIENCE

Mapping signatures of positive selection in the genome of livestock

(2014) Saber Qanbari et al.   Livestock Science

Population Genomic Analyses Based on 1 Million SNPs in Commercial Egg Layers

(2014) Mahmood Gholami et al.   PLoS One

Two novel pathway analysis methods based on a hierarchical model

(2013) Marina Evangelou et al.   BIOINFORMATICS

Genetic background of claw disorders in the course of lactation and their relationships with type traits

(2013) E. Gernand et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Signatures of contemporary selection in the Israeli Holstein dairy cattle

(2012) G. Glick et al.   ANIMAL GENETICS

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Genomic scan of selective sweeps in thin and fat tail sheep breeds for identifying of candidate regions associated with fat deposition

(2012) Mohammad Hossein Moradi et al.   BMC GENETICS

Sequential activation of genetic programs in mouse mammary epithelium during pregnancy depends on STAT5A/B concentration

(2012) Daisuke Yamaji et al.   NUCLEIC ACIDS RESEARCH

Genome-wide association analysis for feed efficiency in Angus cattle

(2011) M. M. Rolf et al.   ANIMAL GENETICS

Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle

(2011) Saber Qanbari et al.   BMC GENOMICS

Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows

(2011) John B Cole et al.   BMC GENOMICS

Molecular cloning, promoter analysis, SNP detection of Clusterin gene and their associations with mastitis in Chinese Holstein cows

(2011) Zeying Wang et al.   MOLECULAR BIOLOGY REPORTS

A genome scan for quantitative trait loci influencing carcass, post-natal growth and reproductive traits in commercial Angus cattle

(2010) M. C. McClure et al.   ANIMAL GENETICS

Cryptochrome mediates circadian regulation of cAMP signaling and hepatic gluconeogenesis

(2010) Eric E Zhang et al.   NATURE MEDICINE

Analysing biological pathways in genome-wide association studies

(2010) Kai Wang et al.   NATURE REVIEWS GENETICS

Negative energy balance and hepatic gene expression patterns in high-yielding dairy cows during the early postpartum period: a global approach

(2010) S. D. McCarthy et al.   PHYSIOLOGICAL GENOMICS

An examination of positive selection and changing effective population size in Angus and Holstein cattle populations (Bos taurus) using a high density SNP genotyping platform and the contribution of ancient polymorphism to genomic diversity in Domestic cattle

(2009) Sean MacEachern et al.   BMC GENOMICS

Genetic parameters for major milk proteins in Dutch Holstein-Friesians

(2009) G.C.B. Schopen et al.   JOURNAL OF DAIRY SCIENCE

Genetics in geographically structured populations: defining, estimating and interpreting FST

(2009) Kent E. Holsinger et al.   NATURE REVIEWS GENETICS

Pathway Analysis of GWAS Provides New Insights into Genetic Susceptibility to 3 Inflammatory Diseases

(2009) Hariklia Eleftherohorinou et al.   PLoS One

A nonsense mutation in cGMP-dependent type II protein kinase (PRKG2) causes dwarfism in American Angus cattle

(2009) J. E. Koltes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detection of quantitative trait loci for meat quality traits in cattle

(2008) B. Gutiérrez-Gil et al.   ANIMAL GENETICS

A Whole-Genome Scan to Map Quantitative Trait Loci for Conformation and Functional Traits in Canadian Holstein Bulls

(2008) D. Kolbehdari et al.   JOURNAL OF DAIRY SCIENCE

Transcriptome profiling of Streptococcus uberis-induced mastitis reveals fundamental differences between immune gene expression in the mammary gland and in a primary cell culture model

(2008) K.M. Swanson et al.   JOURNAL OF DAIRY SCIENCE