A transcriptome-based model of central memory CD4 T cell death in HIV infection

Short Communication: Apoptosis Pathways in HIV-1-Infected Patients Before and After Highly Active Antiretroviral Therapy: Relevance to Immune Recovery

(2015) David L. Pitrak et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Preferential loss of gut-homing α4β7 CD4+ T cells and their circulating functional subsets in acute HIV-1 infection

(2015) Xiaofan Lu et al.   Cellular & Molecular Immunology

Live to die another way: modes of programmed cell death and the signals emanating from dying cells

(2015) Yaron Fuchs et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Evaluation of reference genes for expression studies in leukocytes from term human pregnancy

(2015) R. Vega-Sanchez et al.   PLACENTA

Statistics requantitates the central dogma

(2015) J. J. Li et al.   SCIENCE

Dynamic profiling of the protein life cycle in response to pathogens

(2015) M. Jovanovic et al.   SCIENCE

Longitudinal Changes in Plasma Caspase-1 and Caspase-3 during the First 2 Years of HIV-1 Infection in CD4Low and CD4High Patient Groups

(2015) Jingjing Song et al.   PLoS One

Influence of hepatitis C virus coinfection on CD4+ T cells of HIV-infected patients receiving HAART

(2014) Konstantin V. Shmagel et al.   AIDS

Serial Transfer of Single-Cell-Derived Immunocompetence Reveals Stemness of CD8+ Central Memory T Cells

(2014) Patricia Graef et al.   IMMUNITY

Coordinate control of cytoskeletal remodeling and calcium mobilization during T-cell activation

(2014) Alexander Babich et al.   IMMUNOLOGICAL REVIEWS

Inflammatory Cytokines Drive CD4+ T-Cell Cycling and Impaired Responsiveness to Interleukin 7: Implications for Immune Failure in HIV Disease

(2014) Carey L. Shive et al.   JOURNAL OF INFECTIOUS DISEASES

The adaptor TRAF5 limits the differentiation of inflammatory CD4+ T cells by antagonizing signaling via the receptor for IL-6

(2014) Hiroyuki Nagashima et al.   NATURE IMMUNOLOGY

Impact of regulatory variation from RNA to protein

(2014) A. Battle et al.   SCIENCE

Cytomegalovirus-specific responses of CD38+ memory T cells are skewed towards IFN-γ and dissociated from CD154 in HIV-1 infection

(2013) Gustavo Olvera-García et al.   AIDS

Causal analysis approaches in Ingenuity Pathway Analysis

(2013) Andreas Krämer et al.   BIOINFORMATICS

Mitosis and apoptosis: how is the balance set?

(2013) Caroline H Topham et al.   CURRENT OPINION IN CELL BIOLOGY

Pyroptotic death storms and cytopenia

(2013) Ben A Croker et al.   CURRENT OPINION IN IMMUNOLOGY

The who's who of T-cell differentiation: Human memory T-cell subsets

(2013) Yolanda D. Mahnke et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

CD4+T-cell depletion in HIV infection: mechanisms of immunological failure

(2013) Afam A. Okoye et al.   IMMUNOLOGICAL REVIEWS

The DNA damage response during mitosis

(2013) Anne Margriet Heijink et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Cell death by pyroptosis drives CD4 T-cell depletion in HIV-1 infection

(2013) Gilad Doitsh et al.   NATURE

In Vivo Targeting of ADAM9 Gene Expression Using Lentivirus-Delivered shRNA Suppresses Prostate Cancer Growth by Regulating REG4 Dependent Cell Cycle Progression

(2013) Che-Ming Liu et al.   PLoS One

CD4+CD62L+ Central Memory T Cells Can Be Converted to Foxp3+ T Cells

(2013) Xiaolong Zhang et al.   PLoS One

How apoptotic cells aid in the removal of their own cold dead bodies

(2012) G Wickman et al.   CELL DEATH AND DIFFERENTIATION

CtIP-dependent DNA resection is required for DNA damage checkpoint maintenance but not initiation

(2012) Arne Nedergaard Kousholt et al.   JOURNAL OF CELL BIOLOGY

Naive T cells are dispensable for memory CD4 + T cell homeostasis in progressive simian immunodeficiency virus infection

(2012) Afam A. Okoye et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Differential effects of HIV viral load and CD4 count on proliferation of naive and memory CD4 and CD8 T lymphocytes

(2011) S. Srinivasula et al.   BLOOD

Central Memory CD4 Cells Are an Early Indicator of Immune Reconstitution in HIV/AIDS Patients with Anti-Retroviral Treatment

(2011) Wei Hua et al.   IMMUNOLOGICAL INVESTIGATIONS

Caspase-1-induced pyroptotic cell death

(2011) Edward A. Miao et al.   IMMUNOLOGICAL REVIEWS

Transcription factor Foxp1 exerts essential cell-intrinsic regulation of the quiescence of naive T cells

(2011) Xiaoming Feng et al.   NATURE IMMUNOLOGY

A human memory T cell subset with stem cell–like properties

(2011) Luca Gattinoni et al.   NATURE MEDICINE

Constitutive exposure of phosphatidylserine on viable cells

(2011) K. Segawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Analysis of Proteome and Transcriptome Variation in Mouse

(2011) Anatole Ghazalpour et al.   PLoS Genetics

E2F8 Contributes to Human Hepatocellular Carcinoma via Regulating Cell Proliferation

(2010) Q. Deng et al.   CANCER RESEARCH

Loss of mucosal CD4 lymphocytes is an early feature of HIV infection

(2010) S. G. LIM et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

Dissociation of CD154 and Cytokine Expression Patterns in CD38+ CD4+ Memory T Cells in Chronic HIV-1 Infection

(2010) Enrique Espinosa et al.   JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES

Disruption of Intestinal CD4+ T Cell Homeostasis Is a Key Marker of Systemic CD4+ T Cell Activation in HIV-Infected Individuals

(2010) S. N. Gordon et al.   JOURNAL OF IMMUNOLOGY

Effectors and memories: Bcl-6 and Blimp-1 in T and B lymphocyte differentiation

(2010) Shane Crotty et al.   NATURE IMMUNOLOGY

KLRG1—more than a marker for T cell senescence

(2009) Sian M. Henson et al.   AGE

Infection With Different HIV Subtypes Is Associated With CD4 Activation-Associated Dysfunction and Apoptosis

(2009) Stephanie Bousheri et al.   JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES

Cyclin E Is Stabilized in Response to Replication Fork Barriers Leading to Prolonged S Phase Arrest

(2009) Xiaoyan Lu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Cell-cycle control in the face of damage – a matter of life or death

(2009) Paul R. Clarke et al.   TRENDS IN CELL BIOLOGY

A genome-wide expression analysis identifies a network of EpCAM-induced cell cycle regulators

(2008) K Maaser et al.   BRITISH JOURNAL OF CANCER

Phenotype and function of human T lymphocyte subsets: Consensus and issues

(2008) Victor Appay et al.   CYTOMETRY PART A

S-phase entry leads to cell death in circulating T cells from HIV-infected persons

(2008) S. F. Sieg et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Transitory Viremic Surges in a Human Immunodeficiency Virus-Positive Elite Controller Can Shift the Cellular Transcriptome Profile: a Word of Caution for Microarray Studies

(2008) J. Q. Wu et al.   JOURNAL OF VIROLOGY

Transcription factor FOXO3a controls the persistence of memory CD4+ T cells during HIV infection

(2008) Julien van Grevenynghe et al.   NATURE MEDICINE

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

The strength of T cell stimulation determines IL-7 responsiveness, secondary expansion, and lineage commitment of primed human CD4+IL-7Rhi T cells

(2007) Laura Lozza et al.   EUROPEAN JOURNAL OF IMMUNOLOGY