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Separable roles forMycobacterium tuberculosisESX-3 effectors in iron acquisition and virulence

(2016) JoAnn M. Tufariello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward Resolving the Paradox of the Critical Role of the DosR Regulon inMycobacterium tuberculosisPersistence and Active Disease

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Lipid metabolism and Type VII secretion systems dominate the genome scale virulence profile of Mycobacterium tuberculosis in human dendritic cells

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Orchestrating high-throughput genomic analysis with Bioconductor

(2015) Wolfgang Huber et al.   NATURE METHODS

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

ESX/type VII secretion systems of mycobacteria: Insights into evolution, pathogenicity and protection

(2015) Roxane Simeone et al.   TUBERCULOSIS

The DNA-binding network of Mycobacterium tuberculosis

(2015) Kyle J. Minch et al.   Nature Communications

De novo assembly of bacterial transcriptomes from RNA-seq data

(2015) Brian Tjaden   GENOME BIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Lacking alignments? The next-generation sequencing mapper segemehl revisited

(2014) Christian Otto et al.   BIOINFORMATICS

Expanded microbial genome coverage and improved protein family annotation in the COG database

(2014) Michael Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains

(2014) Patrick R. Wright et al.   NUCLEIC ACIDS RESEARCH

COV2HTML: A Visualization and Analysis Tool of Bacterial Next Generation Sequencing (NGS) Data for Postgenomics Life Scientists

(2014) Marc Monot et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Small RNAs in mycobacteria: an unfolding story

(2014) Katie Haning et al.   Frontiers in Cellular and Infection Microbiology

Take five — Type VII secretion systems of Mycobacteria

(2013) Edith N.G. Houben et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Regulation of pathogenicity by noncoding RNAs in bacteria

(2013) Yanping Han et al.   Future Microbiology

Computational analysis of bacterial RNA-Seq data

(2013) Ryan McClure et al.   NUCLEIC ACIDS RESEARCH

Discovery of a Siderophore Export System Essential for Virulence of Mycobacterium tuberculosis

(2013) Ryan M. Wells et al.   PLoS Pathogens

HowMycobacterium tuberculosisgoes to sleep: the dormancy survival regulator DosR a decade later

(2012) Calvin Boon et al.   Future Microbiology

Bacterial stress responses as determinants of antimicrobial resistance

(2012) K. Poole   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Genome-Wide Discovery of Small RNAs in Mycobacterium tuberculosis

(2012) Paolo Miotto et al.   PLoS One

Non-coding RNA and its potential role in Mycobacterium tuberculosis pathogenesis

(2012) Kristine Arnvig et al.   RNA Biology

The ada operon of Mycobacterium tuberculosis encodes two DNA methyltransferases for inducible repair of DNA alkylation damage

(2011) Mingyi Yang et al.   DNA REPAIR

Expression of the Mycobacterium tuberculosis PPE37 protein in Mycobacterium smegmatis induces low tumour necrosis factor alpha and interleukin 6 production in murine macrophages

(2011) S. Daim et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Mycobacterium Tuberculosis Response to Stress from Reactive Oxygen and Nitrogen Species

(2011) Gyanu Lamichhane   Frontiers in Microbiology

The Response of Mycobacterium Tuberculosis to Reactive Oxygen and Nitrogen Species

(2011) Martin I. Voskuil et al.   Frontiers in Microbiology

Regulatory RNA in Bacterial Pathogens

(2010) Kai Papenfort et al.   Cell Host & Microbe

Protein export systems ofMycobacterium tuberculosis: novel targets for drug development?

(2010) Meghan E Feltcher et al.   Future Microbiology

Mycobacteria exploit three genetically distinct DNA double-strand break repair pathways

(2010) Richa Gupta et al.   MOLECULAR MICROBIOLOGY

Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNA

(2010) C. Smith et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes

(2010) Alexandra Sittka et al.   RNA Biology

Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects

(2009) Francis Repoila et al.   BIOLOGY OF THE CELL

Regulatory RNAs in Bacteria

(2009) Lauren S. Waters et al.   CELL

Characterization of the major formamidopyrimidine-DNA glycosylase homolog inMycobacterium tuberculosisand its linkage to variable tandem repeats

(2009) Ingrid Olsen et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Characterization of a Mycobacterium tuberculosis ESX-3 Conditional Mutant: Essentiality and Rescue by Iron and Zinc

(2009) A. Serafini et al.   JOURNAL OF BACTERIOLOGY

Identification of small RNAs inMycobacterium tuberculosis

(2009) Kristine B. Arnvig et al.   MOLECULAR MICROBIOLOGY

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

Acute and Persistent Mycobacterium tuberculosis Infections Depend on the Thiol Peroxidase TPX

(2009) Yanmin Hu et al.   PLoS One

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

(2009) Steve Hoffmann et al.   PLoS Computational Biology

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

(2008) Anke Busch et al.   BIOINFORMATICS

Oxidative Stress and Iron Homeostasis: Mechanistic and Health Aspects

(2008) Dimitrios Galaris et al.   CRITICAL REVIEWS IN CLINICAL LABORATORY SCIENCES