Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica

Engineering lipid overproduction in the oleaginous yeast Yarrowia lipolytica

(2015) Kangjian Qiao et al.   METABOLIC ENGINEERING

Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis

(2015) Kyle R. Pomraning et al.   PLoS One

Glucose- and nitrogen sensing and regulatory mechanisms inSaccharomyces cerevisiae

(2014) Steven V. Rødkaer et al.   FEMS YEAST RESEARCH

Accumulation of High-Value Lipids in Single-Cell Microorganisms: A Mechanistic Approach and Future Perspectives

(2014) Luis A. Garay et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Improving polyketide and fatty acid synthesis by engineering of the yeast acetyl-CoA carboxylase

(2014) Jin Wook Choi et al.   JOURNAL OF BIOTECHNOLOGY

Enhanced lipid accumulation in the yeast Yarrowia lipolytica by over-expression of ATP:citrate lyase from Mus musculus

(2014) Huaiyuan Zhang et al.   JOURNAL OF BIOTECHNOLOGY

Ischemia in Tumors Induces Early and Sustained Phosphorylation Changes in Stress Kinase Pathways but Does Not Affect Global Protein Levels

(2014) Philipp Mertins et al.   MOLECULAR & CELLULAR PROTEOMICS

Structural basis for the inhibition of the eukaryotic ribosome

(2014) Nicolas Garreau de Loubresse et al.   NATURE

Harnessing Yarrowia lipolytica lipogenesis to create a platform for lipid and biofuel production

(2014) John Blazeck et al.   Nature Communications

MS-GF+ makes progress towards a universal database search tool for proteomics

(2014) Sangtae Kim et al.   Nature Communications

Manipulation of culture conditions alters lipid content and fatty acid profiles of a wide variety of known and new oleaginous yeast species

(2013) Irnayuli R. Sitepu et al.   BIORESOURCE TECHNOLOGY

Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes

(2013) Young-Mo Kim et al.   Molecular BioSystems

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

(2013) Danielle L Swaney et al.   NATURE METHODS

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update

(2013) I. Sadowski et al.   Database-The Journal of Biological Databases and Curation

Disruption of the MIG1 gene enhances lipid biosynthesis in the oleaginous yeast Yarrowia lipolytica ACA-DC 50109

(2012) Zhi-Peng Wang et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Quantitative phosphoproteomics identifies filaggrin and other targets of ionizing radiation in a human skin model

(2012) Feng Yang et al.   EXPERIMENTAL DERMATOLOGY

Isolation and characterization of two crude oil-degrading yeast strains, Yarrowia lipolytica PG-20 and PG-32, from the Persian Gulf

(2012) Mehdi Hassanshahian et al.   MARINE POLLUTION BULLETIN

Engineering the push and pull of lipid biosynthesis in oleaginous yeast Yarrowia lipolytica for biofuel production

(2012) Mitchell Tai et al.   METABOLIC ENGINEERING

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides

(2012) Zhiwei Zhu et al.   Nature Communications

Oily yeasts as oleaginous cell factories

(2011) Jose Manuel Ageitos et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Improved similarity scores for comparing motifs

(2011) Emi Tanaka et al.   BIOINFORMATICS

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

(2011) Lee Kamentsky et al.   BIOINFORMATICS

DREME: motif discovery in transcription factor ChIP-seq data

(2011) Timothy L. Bailey   BIOINFORMATICS

Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L

(2011) Alexandre Huber et al.   EMBO JOURNAL

Bulk Segregant Analysis Followed by High-Throughput Sequencing Reveals the Neurospora Cell Cycle Gene, ndc-1 , To Be Allelic with the Gene for Ornithine Decarboxylase, spe-1

(2011) Kyle R. Pomraning et al.   EUKARYOTIC CELL

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

Transcriptomic Analyses during the Transition from Biomass Production to Lipid Accumulation in the Oleaginous Yeast Yarrowia lipolytica

(2011) Nicolas Morin et al.   PLoS One

Stb3 Plays a Role in the Glucose-Induced Transition from Quiescence to Growth in Saccharomyces cerevisiae

(2010) D. Liko et al.   GENETICS

Magnetic Bead Processor for Rapid Evaluation and Optimization of Parameters for Phosphopeptide Enrichment

(2009) Scott B. Ficarro et al.   ANALYTICAL CHEMISTRY

MetaboliteDetector: Comprehensive Analysis Tool for Targeted and Nontargeted GC/MS Based Metabolome Analysis

(2009) Karsten Hiller et al.   ANALYTICAL CHEMISTRY

Yarrowia lipolytica: A model and a tool to understand the mechanisms implicated in lipid accumulation

(2009) Athanasios Beopoulos et al.   BIOCHIMIE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Rearrangements of the transcriptional regulatory networks of metabolic pathways in fungi

(2009) Hugo Lavoie et al.   CURRENT OPINION IN MICROBIOLOGY

DtaRefinery, a Software Tool for Elimination of Systematic Errors from Parent Ion Mass Measurements in Tandem Mass Spectra Data Sets

(2009) Vladislav A. Petyuk et al.   MOLECULAR & CELLULAR PROTEOMICS

The Yeast GATA Factor Gat1 Occupies a Central Position in Nitrogen Catabolite Repression-Sensitive Gene Activation

(2009) I. Georis et al.   MOLECULAR AND CELLULAR BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

HowSaccharomycesResponds to Nutrients

(2008) Shadia Zaman et al.   Annual Review of Genetics

Control of Lipid Accumulation in the Yeast Yarrowia lipolytica

(2008) A. Beopoulos et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DAnTE: a statistical tool for quantitative analysis of -omics data

(2008) A. D. Polpitiya et al.   BIOINFORMATICS

MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC–MS(/MS) features

(2008) Matthew E. Monroe et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Recent Advances in Nitrogen Regulation: a Comparison betweenSaccharomyces cerevisiaeand Filamentous Fungi

(2008) Koon Ho Wong et al.   EUKARYOTIC CELL

A Library of Yeast Transcription Factor Motifs Reveals a Widespread Function for Rsc3 in Targeting Nucleosome Exclusion at Promoters

(2008) Gwenael Badis et al.   MOLECULAR CELL

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

(2008) D. E. Newburger et al.   NUCLEIC ACIDS RESEARCH