Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes

The architecture and ppGpp-dependent expression of the primary transcriptome of Salmonella Typhimurium during invasion gene expression

(2012) Vinoy K Ramachandran et al.   BMC GENOMICS

Analysis of omics data with genome-scale models of metabolism

(2012) Daniel R. Hyduke et al.   Molecular BioSystems

Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation

(2012) Aarash Bordbar et al.   Molecular Systems Biology

Elimination of Thermodynamically Infeasible Loops in Steady-State Metabolic Models

(2011) Jan Schellenberger et al.   BIOPHYSICAL JOURNAL

Host response transcriptional profiling reveals extracellular components and ABC (ATP-binding cassette) transporters gene enrichment in typhoid fever-infected Nigerian children

(2011) Sok Kean Khoo et al.   BMC INFECTIOUS DISEASES

Comparative proteomic analysis of Salmonella enterica serovar Typhimurium ppGpp-deficient mutant to identify a novel virulence protein required for intracellular survival in macrophages

(2011) Takeshi Haneda et al.   BMC MICROBIOLOGY

Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella

(2011) Hyunjin Yoon et al.   BMC Systems Biology

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2

(2011) Ines Thiele et al.   BMC Systems Biology

Subversion of innate and adaptive immune activation induced by structurally modified lipopolysaccharide from Salmonella typhimurium

(2011) Rodolfo Pastelin-Palacios et al.   IMMUNOLOGY

Impact ofSalmonellaInfection on Host Hormone Metabolism Revealed by Metabolomics

(2011) L. Caetano M. Antunes et al.   INFECTION AND IMMUNITY

Metabolomics Reveals Phospholipids as Important Nutrient Sources during Salmonella Growth in Bile In Vitro and In Vivo

(2011) L. C. M. Antunes et al.   JOURNAL OF BACTERIOLOGY

Quantitative Mass Spectrometry CataloguesSalmonellaPathogenicity Island-2 Effectors and Identifies Their Cognate Host Binding Partners

(2011) Sigrid D. Auweter et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

GC-MS Based Metabolomics for Rapid Simultaneous Detection of Escherichia coli O157:H7, Salmonella Typhimurium, Salmonella Muenchen, and Salmonella Hartford in Ground Beef and Chicken

(2011) Juan Manuel Cevallos-Cevallos et al.   JOURNAL OF FOOD SCIENCE

Quantitative Proteomic Analysis ofSalmonella entericaSerovar Typhimurium under PhoP/PhoQ Activation Conditions

(2011) Jian-Lan Yu et al.   JOURNAL OF PROTEOME RESEARCH

Biological and virulence characteristics of the YqhC mutant of Salmonella

(2011) Nicholas M. Eakley et al.   MICROBIOLOGY AND IMMUNOLOGY

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Rapid and Highly Efficient Method for Scarless Mutagenesis within the Salmonella enterica Chromosome

(2011) Kathrin Blank et al.   PLoS One

Gitools: Analysis and Visualisation of Genomic Data Using Interactive Heat-Maps

(2011) Christian Perez-Llamas et al.   PLoS One

Exposure of Salmonella enterica Serovar Typhimurium to High Level Biocide Challenge Can Select Multidrug Resistant Mutants in a Single Step

(2011) Rebekah N. Whitehead et al.   PLoS One

Quantitative proteomic identification of host factors involved in theSalmonella typhimuriuminfection cycle

(2011) Mijke W. Vogels et al.   PROTEOMICS

Formation of dehydroalanine from mimosine and cysteine: artifacts in gas chromatography/mass spectrometry based metabolomics

(2011) Young-Mo Kim et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Are pathogenic bacteria just looking for food? Metabolism and microbial pathogenesis

(2011) Laurence Rohmer et al.   TRENDS IN MICROBIOLOGY

A Systems Biology Approach to Infectious Disease Research: Innovating the Pathogen-Host Research Paradigm

(2011) A. Aderem et al.   mBio

Technologies and Approaches to Elucidate and Model the Virulence Program of Salmonella

(2011) Jason E. McDermott et al.   Frontiers in Microbiology

Metabolic profiling of meat: assessment of pork hygiene and contamination with Salmonella typhimurium

(2010) Yun Xu et al.   ANALYST

VOC-based metabolic profiling for food spoilage detection with the application to detecting Salmonella typhimurium-contaminated pork

(2010) Yun Xu et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Discovery of Novel Secreted Virulence Factors fromSalmonella entericaSerovar Typhimurium by Proteomic Analysis of Culture Supernatants

(2010) George S. Niemann et al.   INFECTION AND IMMUNITY

Metabolic Network Analysis of Pseudomonas aeruginosa during Chronic Cystic Fibrosis Lung Infection

(2010) M. A. Oberhardt et al.   JOURNAL OF BACTERIOLOGY

Fast Detection of Volatile Organic Compounds from Bacterial Cultures by Secondary Electrospray Ionization-Mass Spectrometry

(2010) Jiangjiang Zhu et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Quantitative metabolomics based on gas chromatography mass spectrometry: status and perspectives

(2010) Maud M. Koek et al.   Metabolomics

Glucose and glucose 6-phosphate as carbon sources in extra- and intracellular growth of enteroinvasive Escherichia coli and Salmonella enterica

(2010) A. Gotz et al.   MICROBIOLOGY-SGM

Oral putrescine restores virulence of ornithine decarboxylase-deficient Leishmania donovani in mice

(2010) Tamara Olenyik et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

Carbon metabolism of intracellular bacterial pathogens and possible links to virulence

(2010) Wolfgang Eisenreich et al.   NATURE REVIEWS MICROBIOLOGY

Carbon Metabolism of Enterobacterial Human Pathogens Growing in Epithelial Colorectal Adenocarcinoma (Caco-2) Cells

(2010) Andreas Götz et al.   PLoS One

A Global Metabolic Shift Is Linked to Salmonella Multicellular Development

(2010) Aaron P. White et al.   PLoS One

Characterisation of proteins extracted from the surface of Salmonella Typhimurium grown under SPI-2-inducing conditions by LC-ESI/MS/MS sequencing

(2010) Aileen E. Sherry et al.   PROTEOMICS

MetaboliteDetector: Comprehensive Analysis Tool for Targeted and Nontargeted GC/MS Based Metabolome Analysis

(2009) Karsten Hiller et al.   ANALYTICAL CHEMISTRY

FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry

(2009) Tobias Kind et al.   ANALYTICAL CHEMISTRY

Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction

(2009) Anu Raghunathan et al.   BMC Systems Biology

System-level analysis of Salmonella metabolism during infection

(2009) Dirk Bumann   CURRENT OPINION IN MICROBIOLOGY

Contribution of Gene Amplification to Evolution of Increased Antibiotic Resistance in Salmonella typhimurium

(2009) Song Sun et al.   GENETICS

Genome Expression Analyses Revealing the Modulation of the Salmonella Rcs Regulon by the Attenuator IgaA

(2009) J. F. Mariscotti et al.   JOURNAL OF BACTERIOLOGY

Genome Scale Reconstruction of a Salmonella Metabolic Model

(2009) Manal AbuOun et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Coordinated Regulation of Virulence during Systemic Infection of Salmonella enterica Serovar Typhimurium

(2009) Hyunjin Yoon et al.   PLoS Pathogens

DAnTE: a statistical tool for quantitative analysis of -omics data

(2008) A. D. Polpitiya et al.   BIOINFORMATICS

Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks

(2008) Ana Oliveira et al.   BMC Systems Biology

Reconstruction of biochemical networks in microorganisms

(2008) Adam M. Feist et al.   NATURE REVIEWS MICROBIOLOGY

Quality control for plant metabolomics: reporting MSI-compliant studies

(2008) Oliver Fiehn et al.   PLANT JOURNAL

Context-Specific Metabolic Networks Are Consistent with Experiments

(2008) Scott A. Becker et al.   PLoS Computational Biology

Microbial contamination of fruit and vegetables and the behaviour of enteropathogens in the phyllosphere: a review

(2007) J.C. Heaton et al.   JOURNAL OF APPLIED MICROBIOLOGY