OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

Dissection of the complex genetic basis of craniofacial anomalies using haploid genetics and interspecies hybrids in Nasonia wasps

(2016) John H. Werren et al.   DEVELOPMENTAL BIOLOGY

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Analysis of 5’ gene regions reveals extraordinary conservation of novel non-coding sequences in a wide range of animals

(2015) Nathaniel J. Davies et al.   BMC EVOLUTIONARY BIOLOGY

Learning-induced gene expression in the heads of two Nasonia species that differ in long-term memory formation

(2015) Katja M Hoedjes et al.   BMC GENOMICS

The Expanding Genetic Toolbox of the Wasp Nasonia vitripennis and Its Relatives

(2015) Jeremy A. Lynch   GENETICS

Genetic and epigenetic architecture of sex-biased expression in the jewel waspsNasonia vitripennisandgiraulti

(2015) Xu Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Expanding Genetic Toolbox of the Wasp Nasonia vitripennis and Its Relatives

(2015) Jeremy A. Lynch   GENETICS

A maturing understanding of the composition of the insect gene repertoire

(2015) Robert M Waterhouse   Current Opinion in Insect Science

Finding the missing honey bee genes: lessons learned from a genome upgrade

(2014) Christine G Elsik et al.   BMC GENOMICS

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

(2014) B. A. Moyers et al.   MOLECULAR BIOLOGY AND EVOLUTION

RNA regulons in Hox 5′ UTRs confer ribosome specificity to gene regulation

(2014) Shifeng Xue et al.   NATURE

Diversity and dynamics of the Drosophila transcriptome

(2014) James B. Brown et al.   NATURE

Comparative analysis of the transcriptome across distant species

(2014) Mark B. Gerstein et al.   NATURE

Eusocial insects as emerging models for behavioural epigenetics

(2014) Hua Yan et al.   NATURE REVIEWS GENETICS

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software

(2014) Evgenia V. Kriventseva et al.   NUCLEIC ACIDS RESEARCH

The role of long non-coding RNAs in neurodevelopment, brain function and neurological disease

(2014) T. C. Roberts et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes

(2013) Walter L Eckalbar et al.   BMC GENOMICS

Patterning the dorsal–ventral axis of the wasp Nasonia vitripennis

(2013) Thomas Buchta et al.   DEVELOPMENTAL BIOLOGY

GENETIC AND DEVELOPMENTAL BASIS OF F2HYBRID BREAKDOWN INNASONIAPARASITOID WASPS

(2013) J. D. Gibson et al.   EVOLUTION

Behavioural and genetic analyses of Nasonia shed light on the evolution of sex pheromones

(2013) Oliver Niehuis et al.   NATURE

Assessment of transcript reconstruction methods for RNA-seq

(2013) Tamara Steijger et al.   NATURE METHODS

The Transcriptomic Basis of Oviposition Behaviour in the Parasitoid Wasp Nasonia vitripennis

(2013) Bart A. Pannebakker et al.   PLoS One

Characterizing the Infection-Induced Transcriptome of Nasonia vitripennis Reveals a Preponderance of Taxonomically-Restricted Immune Genes

(2013) Timothy B. Sackton et al.   PLoS One

The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia

(2013) R. M. Brucker et al.   SCIENCE

Fine-Scale Mapping of the Nasonia Genome to Chromosomes Using a High-Density Genotyping Microarray

(2013) Christopher A. Desjardins et al.   G3-Genes Genomes Genetics

The Vast, Conserved Mammalian lincRNome

(2013) David Managadze et al.   PLoS Computational Biology

Function and Evolution of DNA Methylation in Nasonia vitripennis

(2013) Xu Wang et al.   PLoS Genetics

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Genome-wide association between DNA methylation and alternative splicing in an invertebrate

(2012) Kevin Flores et al.   BMC GENOMICS

Genome-wide and Caste-Specific DNA Methylomes of the Ants Camponotus floridanus and Harpegnathos saltator

(2012) Roberto Bonasio et al.   CURRENT BIOLOGY

Revisit on the evolutionary relationship between alternative splicing and gene duplication

(2012) Zhixi Su et al.   GENE

Identification and Properties of 1,119 Candidate LincRNA Loci in the Drosophila melanogaster Genome

(2012) Robert S. Young et al.   Genome Biology and Evolution

OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs

(2012) Robert M. Waterhouse et al.   NUCLEIC ACIDS RESEARCH

Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs

(2012) F. Niazi et al.   RNA

Evolution of Shape by Multiple Regulatory Changes to a Growth Gene

(2012) D. W. Loehlin et al.   SCIENCE

Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila

(2012) Peter Smibert et al.   Cell Reports

An evolutionarily and ecologically focused strategy for genome sequencing efforts

(2011) S M Barribeau et al.   HEREDITY

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

(2011) Sanjeev Shukla et al.   NATURE

Non-coding RNAs as regulators of embryogenesis

(2011) Andrea Pauli et al.   NATURE REVIEWS GENETICS

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication

(2010) J. Roux et al.   GENOME RESEARCH

Behavioral and genetic characteristics of a new species of Nasonia

(2010) R Raychoudhury et al.   HEREDITY

A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

(2010) Tomislav Domazet-Lošo et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Histone variants — ancient wrap artists of the epigenome

(2010) Paul B. Talbert et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera

(2010) M. C. Munoz-Torres et al.   NUCLEIC ACIDS RESEARCH

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

(2010) et al.   SCIENCE

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

(2010) J. H. Werren et al.   SCIENCE

The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers

(2010) Frank Lyko et al.   PLOS BIOLOGY

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

The Fruitless Gene in Nasonia Displays Complex Sex-Specific Splicing and Contains New Zinc Finger Domains

(2009) R. C. Bertossa et al.   MOLECULAR BIOLOGY AND EVOLUTION

Systems genetics of complex traits in Drosophila melanogaster

(2009) Julien F Ayroles et al.   NATURE GENETICS

The evolutionary significance of ancient genome duplications

(2009) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

The genetics of quantitative traits: challenges and prospects

(2009) Trudy F. C. Mackay et al.   NATURE REVIEWS GENETICS

The Euchromatic and Heterochromatic Landscapes Are Shaped by Antagonizing Effects of Transcription on H2A.Z Deposition

(2009) Sara Hardy et al.   PLoS Genetics

Genomic and Transcriptional Co-Localization of Protein-Coding and Long Non-Coding RNA Pairs in the Developing Brain

(2009) Jasmina Ponjavic et al.   PLoS Genetics

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The effect of intron length on exon creation ratios during the evolution of mammalian genomes

(2008) M. Roy et al.   RNA

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY