RNA regulons in Hox 5′ UTRs confer ribosome specificity to gene regulation

Standardization of RNA Chemical Mapping Experiments

(2014) Wipapat Kladwang et al.   BIOCHEMISTRY

High-throughput mutate-map-rescue evaluates SHAPE-directed RNA structure and uncovers excited states

(2014) Siqi Tian et al.   RNA

Mod-seq: high-throughput sequencing for chemical probing of RNA structure

(2014) J. Talkish et al.   RNA

HiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresis

(2013) Hanjoo Kim et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2014

(2013) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots

(2013) C. E. Hajdin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Specialized ribosomes: a new frontier in gene regulation and organismal biology

(2012) Shifeng Xue et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A ribosome-specialized translation initiation pathway is required for cap-dependent translation of vesicular stomatitis virus mRNAs

(2012) A. S.-Y. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Efficient TALEN-mediated gene knockout in livestock

(2012) D. F. Carlson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

So you want to know if your message has an IRES?

(2012) Sunnie R. Thompson   Wiley Interdisciplinary Reviews-RNA

The structures of nonprotein-coding RNAs that drive internal ribosome entry site function

(2012) Terra-Dawn M. Plank et al.   Wiley Interdisciplinary Reviews-RNA

HiTRACE: high-throughput robust analysis for capillary electrophoresis

(2011) Sungroh Yoon et al.   BIOINFORMATICS

Ribosome-Mediated Specificity in Hox mRNA Translation and Vertebrate Tissue Patterning

(2011) Nadya Kondrashov et al.   CELL

Selective Translation of Leaderless mRNAs by Specialized Ribosomes Generated by MazF in Escherichia coli

(2011) Oliver Vesper et al.   CELL

Ribosome Binding to a 5' Translational Enhancer Is Altered in the Presence of the 3' Untranslated Region in Cap-Independent Translation of Turnip Crinkle Virus

(2011) V. A. Stupina et al.   JOURNAL OF VIROLOGY

A two-dimensional mutate-and-map strategy for non-coding RNA structure

(2011) Wipapat Kladwang et al.   Nature Chemistry

A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA

(2011) W. Kladwang et al.   RNA

RNAstructure: software for RNA secondary structure prediction and analysis

(2010) Jessica S Reuter et al.   BMC BIOINFORMATICS

Loss of Function of the Tumor Suppressor DKC1 Perturbs p27 Translation Control and Contributes to Pituitary Tumorigenesis

(2010) C. Bellodi et al.   CANCER RESEARCH

Deregulation of oncogene-induced senescence and p53 translational control in X-linked dyskeratosis congenita

(2010) Cristian Bellodi et al.   EMBO JOURNAL

Distinct 5′ UTRs regulate XIAP expression under normal growth conditions and during cellular stress

(2010) Alura Riley et al.   NUCLEIC ACIDS RESEARCH

Multiple Promoters and Alternative Splicing: Hoxa5 Transcriptional Complexity in the Mouse Embryo

(2010) Yan Coulombe et al.   PLoS One

The HCV IRES pseudoknot positions the initiation codon on the 40S ribosomal subunit

(2010) K. E. Berry et al.   RNA

Hox Genes and Segmentation of the Hindbrain and Axial Skeleton

(2009) Tara Alexander et al.   Annual Review of Cell and Developmental Biology

A robust peak detection method for RNA structure inference by high-throughput contact mapping

(2009) J. Kim et al.   BIOINFORMATICS

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

Regulation of Translation Initiation in Eukaryotes: Mechanisms and Biological Targets

(2009) Nahum Sonenberg et al.   CELL

RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs

(2009) D. M. Landry et al.   GENES & DEVELOPMENT

The Eukaryotic Ribosome: Current Status and Challenges

(2009) Jonathan D. Dinman   JOURNAL OF BIOLOGICAL CHEMISTRY

Strong Eukaryotic IRESs Have Weak Secondary Structure

(2009) Xuhua Xia et al.   PLoS One

Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans

(2009) S. E. Calvo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accurate SHAPE-directed RNA structure determination

(2008) K. E. Deigan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA