Transcriptome analysis in oak uncovers a strong impact of endogenous rhythmic growth on the interaction with plant-parasitic nematodes

Plant basal resistance to nematodes: an update

(2016) Julia Holbein et al.   JOURNAL OF EXPERIMENTAL BOTANY

Endogenous rhythmic growth, a trait suitable for the study of interplays between multitrophic interactions and tree development

(2016) S. Herrmann et al.   PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS

Large scale transcriptome analysis reveals interplay between development of forest trees and a beneficial mycorrhiza helper bacterium

(2015) Florence Kurth et al.   BMC GENOMICS

Endogenous rhythmic growth in oak trees is regulated by internal clocks rather than resource availability

(2015) S. Herrmann et al.   JOURNAL OF EXPERIMENTAL BOTANY

Synergists and antagonists in the rhizosphere modulate microbial communities and growth of Quercus robur L.

(2015) Fuensanta Caravaca et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plasma membrane protein trafficking in plant-microbe interactions: a plant cell point of view

(2015) Nathalie Leborgne-Castel et al.   Frontiers in Plant Science

The role of sugar signaling in plant defense responses against fungal pathogens

(2014) Iwona Morkunas et al.   ACTA PHYSIOLOGIAE PLANTARUM

The Activation and Suppression of Plant Innate Immunity by Parasitic Nematodes

(2014) Aska Goverse et al.   Annual Review of Phytopathology

Sweets for the foe - effects of nonstructural carbohydrates on the susceptibility ofQuercus roburagainstPhytophthora quercina

(2014) Oguzhan Angay et al.   NEW PHYTOLOGIST

Oak Root Response to Ectomycorrhizal Symbiosis Establishment: RNA-Seq Derived Transcript Identification and Expression Profiling

(2014) Mónica Sebastiana et al.   PLoS One

Systemic Suppression of the Shoot Metabolism upon Rice Root Nematode Infection

(2014) Tina Kyndt et al.   PLoS One

Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes

(2014) J. M. Plett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Parasitic Worms Stimulate Host NADPH Oxidases to Produce Reactive Oxygen Species That Limit Plant Cell Death and Promote Infection

(2014) S. Siddique et al.   Science Signaling

OakContigDF159.1, a reference library for studying differential gene expression inQuercus roburduring controlled biotic interactions: use for quantitative transcriptomic profiling of oak roots in ectomycorrhizal symbiosis

(2013) Mika T. Tarkka et al.   NEW PHYTOLOGIST

Plant parasitic nematode effectors target host defense and nuclear functions to establish feeding cells

(2013) Michaëel Quentin et al.   Frontiers in Plant Science

Plant systemic induced responses mediate interactions between root parasitic nematodes and aboveground herbivorous insects

(2013) Mesfin Wondafrash et al.   Frontiers in Plant Science

Abscisic acid interacts antagonistically with classical defense pathways in rice-migratory nematode interaction

(2012) Kamrun Nahar et al.   NEW PHYTOLOGIST

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

How nematodes manipulate plant development pathways for infection

(2011) Godelieve Gheysen et al.   CURRENT OPINION IN PLANT BIOLOGY

A Highway for War and Peace: The Secretory Pathway in Plant–Microbe Interactions

(2011) Dong Wang et al.   Molecular Plant

Comparing systemic defence-related gene expression changes upon migratory and sedentary nematode attack in rice

(2011) T. Kyndt et al.   PLANT BIOLOGY

Jasmonic acid perception by COI1 involves inositol polyphosphates in Arabidopsis thaliana

(2011) Alina Mosblech et al.   PLANT JOURNAL

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Nematode effectors and plant responses to infection

(2010) Stephane Bellafiore et al.   CURRENT OPINION IN PLANT BIOLOGY

Cross-talk interactions of sucrose and Fusarium oxysporum in the phenylpropanoid pathway and the accumulation and localization of flavonoids in embryo axes of yellow lupine

(2010) Iwona Morkunas et al.   JOURNAL OF PLANT PHYSIOLOGY

Identification of potential host plant mimics of CLAVATA3/ESR (CLE)-like peptides from the plant-parasitic nematode Heterodera schachtii

(2010) JIANYING WANG et al.   MOLECULAR PLANT PATHOLOGY

Expression of Arabidopsis pathogenesis-related genes during nematode infection

(2010) NOUREDDINE HAMAMOUCH et al.   MOLECULAR PLANT PATHOLOGY

Toward a mechanistic understanding of competition in vascular-feeding herbivores: an empirical test of the sink competition hypothesis

(2010) Ian Kaplan et al.   OECOLOGIA

Sucrose: Metabolite and signaling molecule

(2010) Julia Wind et al.   PHYTOCHEMISTRY

The Novel Cyst Nematode Effector Protein 19C07 Interacts with the Arabidopsis Auxin Influx Transporter LAX3 to Control Feeding Site Development

(2010) C. Lee et al.   PLANT PHYSIOLOGY

Local Adaptation of Aboveground Herbivores towards Plant Phenotypes Induced by Soil Biota

(2010) Dries Bonte et al.   PLoS One

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

The interface between metabolic and stress signalling

(2009) S. J. Hey et al.   ANNALS OF BOTANY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana

(2009) Katja Rosenberg et al.   ISME Journal

Primary Metabolism and Plant Defense—Fuel for the Fire

(2009) Melvin D. Bolton   MOLECULAR PLANT-MICROBE INTERACTIONS

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperateQuercus macrocarpaphyllosphere

(2009) A. Jumpponen et al.   NEW PHYTOLOGIST

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Cellulose Binding Protein from the Parasitic Nematode Heterodera schachtii Interacts with Arabidopsis Pectin Methylesterase: Cooperative Cell Wall Modification during Parasitism

(2008) T. Hewezi et al.   PLANT CELL

A role for inositol hexakisphosphate in the maintenance of basal resistance to plant pathogens

(2008) Alex M. Murphy et al.   PLANT JOURNAL