Large scale transcriptome analysis reveals interplay between development of forest trees and a beneficial mycorrhiza helper bacterium

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

(2015) Isabelle Lesur et al.   BMC GENOMICS

Streptomyces-Induced Resistance Against Oak Powdery Mildew Involves Host Plant Responses in Defense, Photosynthesis, and Secondary Metabolism Pathways

(2014) Florence Kurth et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Sweets for the foe - effects of nonstructural carbohydrates on the susceptibility ofQuercus roburagainstPhytophthora quercina

(2014) Oguzhan Angay et al.   NEW PHYTOLOGIST

Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis betweenLaccaria bicolorandPopulusroots

(2014) Jonathan M. Plett et al.   NEW PHYTOLOGIST

Arabidopsis WRKY57 Functions as a Node of Convergence for Jasmonic Acid- and Auxin-Mediated Signaling in Jasmonic Acid-Induced Leaf Senescence

(2014) Y. Jiang et al.   PLANT CELL

Oak Root Response to Ectomycorrhizal Symbiosis Establishment: RNA-Seq Derived Transcript Identification and Expression Profiling

(2014) Mónica Sebastiana et al.   PLoS One

Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes

(2014) J. M. Plett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detection and quantification of a mycorrhization helper bacterium and a mycorrhizal fungus in plant-soil microcosms at different levels of complexity

(2013) Florence Kurth et al.   BMC MICROBIOLOGY

OakContigDF159.1, a reference library for studying differential gene expression inQuercus roburduring controlled biotic interactions: use for quantitative transcriptomic profiling of oak roots in ectomycorrhizal symbiosis

(2013) Mika T. Tarkka et al.   NEW PHYTOLOGIST

Identification of Arabidopsis BAK1-Associating Receptor-Like Kinase 1 (BARK1) and Characterization of its Gene Expression and Brassinosteroid-Regulated Root Phenotypes

(2013) Min Hee Kim et al.   PLANT AND CELL PHYSIOLOGY

EXO modifies sucrose and trehalose responses and connects the extracellular carbon status to growth

(2013) Janina Lisso et al.   Frontiers in Plant Science

Plant growth-promoting rhizobacteria and root system functioning

(2013) Jordan Vacheron et al.   Frontiers in Plant Science

Identification of genes involved in the ACC-mediated control of root cell elongation in Arabidopsis thaliana

(2012) Marios Markakis et al.   BMC PLANT BIOLOGY

Cross-kingdom interactions matter: fungal-mediated interactions structure an insect community on oak

(2012) Ayco J. M. Tack et al.   ECOLOGY LETTERS

Promoter activities of genes encoding β-galactosidases from Arabidopsis a1 subfamily

(2012) Lucía Albornos et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

AP2/ERF family transcription factors in plant abiotic stress responses

(2011) Junya Mizoi et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Light-harvesting chlorophyll a/b-binding proteins are required for stomatal response to abscisic acid in Arabidopsis

(2011) Yan-Hong Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ethylene-Responsive Element-Binding Factor 5, ERF5, Is Involved in Chitin-Induced Innate Immunity Response

(2011) Geon Hui Son et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

An Arabidopsis (malectin-like) leucine-rich repeat receptor-like kinase contributes to downy mildew disease

(2011) SOPHIE HOK et al.   PLANT CELL AND ENVIRONMENT

The Arabidopsis bZIP Gene AtbZIP63 Is a Sensitive Integrator of Transient Abscisic Acid and Glucose Signals

(2011) C. C. Matiolli et al.   PLANT PHYSIOLOGY

Low Oleic Acid-Derived Repression of Jasmonic Acid-Inducible Defense Responses Requires the WRKY50 and WRKY51 Proteins

(2010) Q.-M. Gao et al.   PLANT PHYSIOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The extracellular EXO protein mediates cell expansion in Arabidopsis leaves

(2009) Florian Schröder et al.   BMC PLANT BIOLOGY

STANDing strong, resistance proteins instigators of plant defence

(2009) Ewa Lukasik et al.   CURRENT OPINION IN PLANT BIOLOGY

Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana

(2009) Katja Rosenberg et al.   ISME Journal

Ectomycorrhizal fungal communities of pedunculate and sessile oak seedlings from bare-root forest nurseries

(2009) Tomasz Leski et al.   MYCORRHIZA

Comparative characterization of the Arabidopsis subfamily a1 β-galactosidases

(2009) Dashzeveg Gantulga et al.   PHYTOCHEMISTRY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Root inoculation with a forest soil streptomycete leads to locally and systemically increased resistance against phytopathogens in Norway spruce

(2008) Nina-Alexandra Lehr et al.   NEW PHYTOLOGIST

Rice DREB1B promoter shows distinct stress-specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance

(2008) Linga Reddy Gutha et al.   PLANT MOLECULAR BIOLOGY

Abscisic Acid, High-Light, and Oxidative Stress Down-Regulate a Photosynthetic Gene via a Promoter Motif Not Involved in Phytochrome-Mediated Transcriptional Regulation

(2007) Roberto J. Staneloni et al.   Molecular Plant