The transposable element environment of human genes is associated with histone and expression changes in cancer
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
The transposable element environment of human genes is associated with histone and expression changes in cancer
Authors
Keywords
Transposable elements, Gene regulation, Epigenetics
Journal
BMC GENOMICS
Volume 17, Issue 1, Pages -
Publisher
Springer Nature
Online
2016-08-09
DOI
10.1186/s12864-016-2970-1
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- UrQt: an efficient software for the Unsupervised Quality trimming of NGS data
- (2015) Laurent Modolo et al. BMC BIOINFORMATICS
- Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution
- (2015) Adam D. Ewing et al. GENOME RESEARCH
- The BioMart community portal: an innovative alternative to large, centralized data repositories
- (2015) Damian Smedley et al. NUCLEIC ACIDS RESEARCH
- Transposable element polymorphisms recapitulate human evolution
- (2015) Lavanya Rishishwar et al. Mobile DNA
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Sequence-Level Mechanisms of Human Epigenome Evolution
- (2014) James G.D. Prendergast et al. Genome Biology and Evolution
- Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing
- (2014) E. Helman et al. GENOME RESEARCH
- COSMIC: exploring the world's knowledge of somatic mutations in human cancer
- (2014) Simon A. Forbes et al. NUCLEIC ACIDS RESEARCH
- “One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
- (2014) Marc Bailly-Bechet et al. Mobile DNA
- Dynamic DNA methylation across diverse human cell lines and tissues
- (2013) K. E. Varley et al. GENOME RESEARCH
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Distinctive patterns of epigenetic marks are associated with promoter regions of mouse LINE-1 and LTR retrotransposons
- (2013) Danny Rangasamy Mobile DNA
- Somatic transposition in the brain has the potential to influence the biosynthesis of metabolites involved in Parkinson’s disease and schizophrenia
- (2012) György Abrusán Biology Direct
- Regional Activation of the Cancer Genome by Long-Range Epigenetic Remodeling
- (2012) Saul A. Bert et al. CANCER CELL
- Active human retrotransposons: variation and disease
- (2012) Dustin C Hancks et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Extensive somatic L1 retrotransposition in colorectal tumors
- (2012) S. Solyom et al. GENOME RESEARCH
- Evolutionary Conservation of Histone Modifications in Mammals
- (2012) Y. H. Woo et al. MOLECULAR BIOLOGY AND EVOLUTION
- Landscape of Somatic Retrotransposition in Human Cancers
- (2012) E. Lee et al. SCIENCE
- Spreading of Heterochromatin Is Limited to Specific Families of Maize Retrotransposons
- (2012) Steven R. Eichten et al. PLoS Genetics
- Epigenetics and cancer without genomic instability
- (2011) Elizabeth S. McKenna et al. CELL CYCLE
- Expressing genes do not forget their LINEs: transposable elements and gene expression
- (2011) Kristine et al. Frontiers in Bioscience-Landmark
- Epigenetic regulation of transposable element derived human gene promoters
- (2011) Ahsan Huda et al. GENE
- Coordinated histone modifications are associated with gene expression variation within and between species
- (2011) M. Ha et al. GENOME RESEARCH
- Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals
- (2011) Vincent J Lynch et al. NATURE GENETICS
- Histone onco-modifications
- (2011) J Füllgrabe et al. ONCOGENE
- Hypomethylation of Intragenic LINE-1 Represses Transcription in Cancer Cells through AGO2
- (2011) Chatchawit Aporntewan et al. PLoS One
- REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
- (2011) Fran Supek et al. PLoS One
- Retrotransposon-Induced Heterochromatin Spreading in the Mouse Revealed by Insertional Polymorphisms
- (2011) Rita Rebollo et al. PLoS Genetics
- Tissue specific DNA methylation of CpG islands in normal human adult somatic tissues distinguishes neural from non-neural tissues
- (2010) Srimoyee Ghosh et al. Epigenetics
- The (r)evolution of SINE versus LINE distributions in primate genomes: Sex chromosomes are important
- (2010) E. M. Kvikstad et al. GENOME RESEARCH
- Genes Devoid of Full-Length Transposable Element Insertions are Involved in Development and in the Regulation of Transcription in Human and Closely Related Species
- (2010) Hussein Mortada et al. JOURNAL OF MOLECULAR EVOLUTION
- Epigenetic modifications and human disease
- (2010) Anna Portela et al. NATURE BIOTECHNOLOGY
- Transposable elements have rewired the core regulatory network of human embryonic stem cells
- (2010) Galih Kunarso et al. NATURE GENETICS
- Histone modification levels are predictive for gene expression
- (2010) R. Karlic et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fast signals and slow marks: the dynamics of histone modifications
- (2010) Teresa K. Barth et al. TRENDS IN BIOCHEMICAL SCIENCES
- Hypomethylation of repeated DNA sequences in cancer
- (2010) Jason P Ross et al. Epigenomics
- Epigenetic histone modifications of human transposable elements: genome defense versus exaptation
- (2010) Ahsan Huda et al. Mobile DNA
- Epigenetic Regulation of Mammalian Genomes by Transposable Elements
- (2009) Ahsan Huda et al. Annals of the New York Academy of Sciences
- GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
- (2009) Eran Eden et al. BMC BIOINFORMATICS
- Epigenetics in cancer
- (2009) S. Sharma et al. CARCINOGENESIS
- Origins and Mechanisms of miRNAs and siRNAs
- (2009) Richard W. Carthew et al. CELL
- Epigenetic control of mammalian LINE-1 retrotransposon by retinoblastoma proteins
- (2009) Diego E. Montoya-Durango et al. MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS
- Small silencing RNAs: an expanding universe
- (2009) Megha Ghildiyal et al. NATURE REVIEWS GENETICS
- Rethinking how DNA methylation patterns are maintained
- (2009) Peter A. Jones et al. NATURE REVIEWS GENETICS
- The impact of retrotransposons on human genome evolution
- (2009) Richard Cordaux et al. NATURE REVIEWS GENETICS
- Developmental programming of CpG island methylation profiles in the human genome
- (2009) Ravid Straussman et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Mammalian non-LTR retrotransposons: For better or worse, in sickness and in health
- (2008) V. P. Belancio et al. GENOME RESEARCH
- H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome
- (2008) F. M. Pauler et al. GENOME RESEARCH
- A universal classification of eukaryotic transposable elements implemented in Repbase
- (2008) Vladimir V. Kapitonov et al. NATURE REVIEWS GENETICS
- Nutritional Control of Reproductive Status in Honeybees via DNA Methylation
- (2008) R. Kucharski et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now