De novo transcriptome analyses of host-fungal interactions in oil palm (Elaeis guineensis Jacq.)

RNA Sequencing of Populus x canadensis Roots Identifies Key Molecular Mechanisms Underlying Physiological Adaption to Excess Zinc

(2015) Andrea Ariani et al.   PLoS One

Study of seed hair growth in Populus tomentosa, an important character of female floral bud development

(2014) Meixia Ye et al.   BMC GENOMICS

Transcriptome profiling shows gene regulation patterns in a flavonoid pathway in response to exogenous phenylalanine in Boesenbergia rotunda cell culture

(2014) Noor Md-Mustafa et al.   BMC GENOMICS

Copper radical oxidases and related extracellular oxidoreductases of wood-decay Agaricomycetes

(2014) Phil Kersten et al.   FUNGAL GENETICS AND BIOLOGY

Multi-Platform Metabolomic Analyses of Ergosterol-Induced Dynamic Changes in Nicotiana tabacum Cells

(2014) Fidele Tugizimana et al.   PLoS One

Transcriptome analysis of Cymbidium sinense and its application to the identification of genes associated with floral development

(2013) Jianxia Zhang et al.   BMC GENOMICS

Expression profiles of putative defence-related proteins in oil palm (Elaeis guineensis) colonized by Ganoderma boninense

(2013) Yung-Chie Tan et al.   JOURNAL OF PLANT PHYSIOLOGY

Deciphering the hormonal signalling network behind the systemic resistance induced by Trichoderma harzianum in tomato

(2013) Ainhoa Martínez-Medina et al.   Frontiers in Plant Science

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Sequence analysis and gene expression of putative exo- and endo-glucanases from oil palm (Elaeis guineensis) during fungal infection

(2012) Keat-Ai Yeoh et al.   JOURNAL OF PLANT PHYSIOLOGY

Sequence analysis and gene expression of putative oil palm chitinase and chitinase-like proteins in response to colonization of Ganoderma boninense and Trichoderma harzianum

(2012) K.-A. Yeoh et al.   MOLECULAR BIOLOGY REPORTS

Ergosterol-Induced Sesquiterpenoid Synthesis in Tobacco Cells

(2012) Fidele Tugizimana et al.   MOLECULES

Transcriptome of oil palm (Elaeis guineensis Jacq.) roots treated with Ganoderma boninense

(2012) Sue-Sean Tee et al.   Tree Genetics & Genomes

Comparison of transcriptomic landscapes of bovine embryos using RNA-Seq

(2011) Wen Huang et al.   BMC GENOMICS

Rice Hypersensitive Induced Reaction Protein 1 (OsHIR1) associates with plasma membrane and triggers hypersensitive cell death

(2011) Liang Zhou et al.   BMC PLANT BIOLOGY

Ergosterol analyses of oil palm seedlings and plants infected with Ganoderma

(2011) A.W. Mohd As’wad et al.   CROP PROTECTION

Colonization of Arabidopsis roots by Trichoderma atroviride promotes growth and enhances systemic disease resistance through jasmonic acid/ethylene and salicylic acid pathways

(2011) Miguel Angel Salas-Marina et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Differential expression of oil palm pathology genes during interactions with Ganoderma boninense and Trichoderma harzianum

(2011) Fahimeh Alizadeh et al.   JOURNAL OF PLANT PHYSIOLOGY

Cloning of transcripts encoding chitinases from Elaeis guineensis Jacq. and their expression profiles in response to fungal infections

(2011) Laila Naher et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq

(2010) S. Zenoni et al.   PLANT PHYSIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

A common toxin fold mediates microbial attack and plant defense

(2009) C. Ottmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RIN4 Functions with Plasma Membrane H+-ATPases to Regulate Stomatal Apertures during Pathogen Attack

(2009) Jun Liu et al.   PLOS BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Effect of the Carbon Source and Inoculum Preparation Method on Laccase and Manganese Peroxidase Production in Submerged Cultivation by the Medicinal Mushroom Ganoderma lucidum (W. Curt.: Fr.) P. Karst. (Aphyllophoromycetideae)

(2008) George G. Songulashvili et al.   INTERNATIONAL JOURNAL OF MEDICINAL MUSHROOMS

RLM3, a TIR domain encoding gene involved in broad-range immunity of Arabidopsis to necrotrophic fungal pathogens

(2008) Jens Staal et al.   PLANT JOURNAL

Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis

(2008) Gunther Doehlemann et al.   PLANT JOURNAL

Trichoderma–plant–pathogen interactions

(2007) Francesco Vinale et al.   SOIL BIOLOGY & BIOCHEMISTRY