RNA Sequencing of Populus x canadensis Roots Identifies Key Molecular Mechanisms Underlying Physiological Adaption to Excess Zinc

A Transcriptomic Network Underlies Microstructural and Physiological Responses to Cadmium in Populus x canescens

(2013) J. He et al.   PLANT PHYSIOLOGY

Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation

(2013) Takanori Kobayashi et al.   Nature Communications

Control of Zn uptake in Arabidopsis halleri: a balance between Zn and Fe

(2013) Varanavasiappan Shanmugam et al.   Frontiers in Plant Science

Getting a sense for signals: Regulation of the plant iron deficiency response

(2012) Maria N. Hindt et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

The zinc homeostasis network of land plants

(2012) Scott Aleksander Sinclair et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Anatomical differences of poplar (Populus × euramericana clone I-214) roots exposed to zinc excess

(2012) Miroslava Stoláriková et al.   BIOLOGIA

The salt-responsive transcriptome of Populus simonii×Populus nigra via DGE

(2012) Su Chen et al.   GENE

Variation in HMA4 gene copy number and expression among Noccaea caerulescens populations presenting different levels of Cd tolerance and accumulation

(2012) Adrian R. Craciun et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transport properties of members of the ZIP family in plants and their role in Zn and Mn homeostasis

(2012) Matthew J. Milner et al.   JOURNAL OF EXPERIMENTAL BOTANY

Elevated Nicotianamine Levels in Arabidopsis halleri Roots Play a Key Role in Zinc Hyperaccumulation

(2012) U. Deinlein et al.   PLANT CELL

Poplar maintains zinc homeostasis with heavy metal genes HMA4 and PCS1

(2011) Joshua P. Adams et al.   JOURNAL OF EXPERIMENTAL BOTANY

The OsNRAMP1 iron transporter is involved in Cd accumulation in rice

(2011) Ryuichi Takahashi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential expression and regulation of iron-regulated metal transporters in Arabidopsis halleri and Arabidopsis thaliana - the role in zinc tolerance

(2011) Varanavasiappan Shanmugam et al.   NEW PHYTOLOGIST

Co-Overexpression FIT with AtbHLH38 or AtbHLH39 in Arabidopsis-Enhanced Cadmium Tolerance via Increased Cadmium Sequestration in Roots and Improved Iron Homeostasis of Shoots

(2011) H. Wu et al.   PLANT PHYSIOLOGY

Transcriptome analyses of Populus x euramericana clone I-214 leaves exposed to excess zinc

(2011) D. Di Baccio et al.   TREE PHYSIOLOGY

Empirical bayes analysis of sequencing-based transcriptional profiling without replicates

(2010) Zhijin Wu et al.   BMC BIOINFORMATICS

Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa

(2010) Palitha Dharmawardhana et al.   BMC GENOMICS

Transcriptome responses to aluminum stress in roots of aspen (Populus tremula)

(2010) Nadine Grisel et al.   BMC PLANT BIOLOGY

Root responses to cadmium in the rhizosphere: a review

(2010) A. Lux et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Genetic architecture of zinc hyperaccumulation in Arabidopsis halleri: the essential role of QTL × environment interactions

(2010) Hélène Frérot et al.   NEW PHYTOLOGIST

Transcriptome changes in the cambial region of poplar (Populus alba L.) in response to water deficit

(2010) M. Berta et al.   PLANT BIOLOGY

What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research

(2010) A. Bräutigam et al.   PLANT BIOLOGY

High-Affinity Manganese Uptake by the Metal Transporter NRAMP1 Is Essential for Arabidopsis Growth in Low Manganese Conditions

(2010) R. Cailliatte et al.   PLANT CELL

The bHLH Transcription Factor POPEYE Regulates Response to Iron Deficiency in Arabidopsis Roots

(2010) T. A. Long et al.   PLANT CELL

Transcriptional Profiling of the Arabidopsis Iron Deficiency Response Reveals Conserved Transition Metal Homeostasis Networks

(2010) T. J. W. Yang et al.   PLANT PHYSIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome

(2009) Edouard I Severing et al.   BMC GENOMICS

Responses of the Populus×euramericana clone I-214 to excess zinc: Carbon assimilation, structural modifications, metal distribution and cellular localization

(2009) D. Di Baccio et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Metal tolerance and hyperaccumulation: Costs and trade-offs between traits and environment

(2009) Elena Maestri et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

The Analysis of Arabidopsis Nicotianamine Synthase Mutants Reveals Functions for Nicotianamine in Seed Iron Loading and Iron Deficiency Responses

(2009) M. Klatte et al.   PLANT PHYSIOLOGY

Arabidopsis IRT2 cooperates with the high-affinity iron uptake system to maintain iron homeostasis in root epidermal cells

(2009) Grégory Vert et al.   PLANTA

Iron fortification of rice seeds through activation of the nicotianamine synthase gene

(2009) S. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Iron-regulated Transporter, MbNRAMP1, Isolated from Malus baccata is Involved in Fe, Mn and Cd Trafficking

(2008) Haihua Xiao et al.   ANNALS OF BOTANY

Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding

(2008) Steven G Ralph et al.   BMC GENOMICS

Heavy metals in European soils: A geostatistical analysis of the FOREGS Geochemical database

(2008) Luis Rodríguez Lado et al.   GEODERMA

Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4

(2008) Marc Hanikenne et al.   NATURE

Different stresses, similar morphogenic responses: integrating a plethora of pathways

(2008) GEERT POTTERS et al.   PLANT CELL AND ENVIRONMENT

Manganese Efficiency in Barley: Identification and Characterization of the Metal Ion Transporter HvIRT1

(2008) P. Pedas et al.   PLANT PHYSIOLOGY

AtHMA3, a P1B-ATPase Allowing Cd/Zn/Co/Pb Vacuolar Storage in Arabidopsis

(2008) M. Morel et al.   PLANT PHYSIOLOGY