Revealing hidden species diversity in closely related species using nuclear SNPs, SSRs and DNA sequences – a case study in the tree genus Milicia

Development of SNP markers for Ayous (Triplochiton scleroxylon K. Schum) an economically important tree species from tropical West and Central Africa

(2016) D. I. Jardine et al.   Conservation Genetics Resources

Delimiting Species-Poor Data Sets using Single Molecular Markers: A Study of Barcode Gaps, Haplowebs and GMYC

(2015) Simon Dellicour et al.   SYSTEMATIC BIOLOGY

Species delimitation and relationships: The dance of the seven veils

(2015) Yamama Naciri et al.   TAXON

Speciation slowing down in widespread and long-living tree taxa: insights from the tropical timber tree genus Milicia (Moraceae)

(2014) K Daïnou et al.   HEREDITY

Diversity of diversity: conceptual and methodological differences in biodiversity estimates of eukaryotic microbes as compared to bacteria

(2014) Jean-David Grattepanche et al.   TRENDS IN MICROBIOLOGY

Comparative phylogeography of eight herbs and lianas (Marantaceae) in central African rainforests

(2014) Alexandra C. Ley et al.   Frontiers in Genetics

Phylogenetic resolution power of microsatellites and various single-nucleotide polymorphism types assessed in 10 divergent chicken populations

(2013) Z. Granevitze et al.   ANIMAL GENETICS

SNP ascertainment bias in population genetic analyses: Why it is important, and how to correct it

(2013) Joseph Lachance et al.   BIOESSAYS

How to fail at species delimitation

(2013) Bryan C. Carstens et al.   MOLECULAR ECOLOGY

Characterizing genic and nongenic molecular markers: comparison of microsatellites and SNPs

(2013) Jacquelin DeFaveri et al.   Molecular Ecology Resources

How Effective Are DNA Barcodes in the Identification of African Rainforest Trees?

(2013) Ingrid Parmentier et al.   PLoS One

Phenological patterns in a natural population of a tropical timber tree species, Milicia excelsa (Moraceae): Evidence of isolation by time and its interaction with feeding strategies of dispersers

(2012) Kasso Daïnou et al.   AMERICAN JOURNAL OF BOTANY

Assessing hidden species diversity in the coral Pocillopora damicornis from Eastern Australia

(2012) S. Schmidt-Roach et al.   CORAL REEFS

Plio-Pleistocene history and phylogeography of Acacia senegal in dry woodlands and savannahs of sub-Saharan tropical Africa: evidence of early colonisation and recent range expansion

(2012) D W Odee et al.   HEREDITY

Species inflation and taxonomic artefacts—A critical comment on recent trends in mammalian classification

(2012) Frank E. Zachos et al.   MAMMALIAN BIOLOGY

Heterozygosity-fitness correlations in zebra finches: microsatellite markers can be better than their reputation

(2012) WOLFGANG FORSTMEIER et al.   MOLECULAR ECOLOGY

Utility of the trnH–psbA Intergenic Spacer Region and Its Combinations as Plant DNA Barcodes: A Meta-Analysis

(2012) Xiaohui Pang et al.   PLoS One

The Effect of Geographical Scale of Sampling on DNA Barcoding

(2012) J. Bergsten et al.   SYSTEMATIC BIOLOGY

What we know and don’t know about Earth's missing biodiversity

(2012) Brett R. Scheffers et al.   TRENDS IN ECOLOGY & EVOLUTION

Measuring ecological niche overlap from occurrence and spatial environmental data

(2011) Olivier Broennimann et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Next-generation hybridization and introgression

(2011) A D Twyford et al.   HEREDITY

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

Comparison of SNPs and microsatellites for fine-scale application of genetic stock identification of Chinook salmon in the Columbia River Basin

(2011) J. E. HESS et al.   Molecular Ecology Resources

Current trends in microsatellite genotyping

(2011) E. GUICHOUX et al.   Molecular Ecology Resources

Choosing and Using a Plant DNA Barcode

(2011) Peter M. Hollingsworth et al.   PLoS One

Haplowebs as a graphical tool for delimiting species: a revival of Doyle's "field for recombination" approach and its application to the coral genus Pocillopora in Clipperton

(2010) Jean-François Flot et al.   BMC EVOLUTIONARY BIOLOGY

Cryptic diversity of the bent-wing bat, Miniopterus schreibersii (Chiroptera: Vespertilionidae), in Asia Minor

(2010) Andrzej Furman et al.   BMC EVOLUTIONARY BIOLOGY

The integrative future of taxonomy

(2010) Jose M. Padial et al.   Frontiers in Zoology

Multi-locus inference of population structure: a comparison between single nucleotide polymorphisms and microsatellites

(2010) R J Haasl et al.   HEREDITY

Do microsatellites reflect genome-wide genetic diversity in natural populations? A comment on Väliet al.(2008)

(2010) MARCUS LJUNGQVIST et al.   MOLECULAR ECOLOGY

Phylogeography of the Afromontane Prunus africana reveals a former migration corridor between East and West African highlands

(2010) C. A. C. KADU et al.   MOLECULAR ECOLOGY

Forest refugia revisited: nSSRs and cpDNA sequences support historical isolation in a wide-spread African tree with high colonization capacity, Milicia excelsa (Moraceae)

(2010) KASSO DAÏNOU et al.   MOLECULAR ECOLOGY

DNA barcoding for the discrimination of Eurasian yews (Taxus L., Taxaceae) and the discovery of cryptic species

(2010) JIE LIU et al.   Molecular Ecology Resources

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Sample selection bias and presence-only distribution models: implications for background and pseudo-absence data

(2009) Steven J. Phillips et al.   ECOLOGICAL APPLICATIONS

Microsatellites Are Molecular Clocks That Support Accurate Inferences about History

(2009) J. X. Sun et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

POPTREE2: Software for Constructing Population Trees from Allele Frequency Data and Computing Other Population Statistics with Windows Interface

(2009) N. Takezaki et al.   MOLECULAR BIOLOGY AND EVOLUTION

Spatial genetic structure inMilicia excelsa(Moraceae) indicates extensive gene dispersal in a low-density wind-pollinated tropical tree

(2009) J.-P. BIZOUX et al.   MOLECULAR ECOLOGY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

Testing plant barcoding in a sister species complex of pantropicalAcacia(Mimosoideae, Fabaceae)

(2009) NEWMASTER STEVEN G. et al.   Molecular Ecology Resources

Cryptic population genetic structure: the number of inferred clusters depends on sample size

(2009) JOHAN FOGELQVIST et al.   Molecular Ecology Resources

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

Development of COS genes as universally amplifiable markers for phylogenetic reconstructions of closely related plant species

(2008) Mingai Li et al.   CLADISTICS

RAPID ADAPTIVE DIVERGENCE IN NEW WORLDACHILLEA, AN AUTOPOLYPLOID COMPLEX OF ECOLOGICAL RACES

(2007) Justin Ramsey et al.   EVOLUTION