Light-sheet microscopy for everyone? Experience of building an OpenSPIM to study flatworm development

Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos

(2016) Johannes Stegmaier et al.   DEVELOPMENTAL CELL

An automated workflow for parallel processing of large multiview SPIM recordings

(2015) Christopher Schmied et al.   BIOINFORMATICS

A Transcriptomic-Phylogenomic Analysis of the Evolutionary Relationships of Flatworms

(2015) Bernhard Egger et al.   CURRENT BIOLOGY

BigDataViewer: visualization and processing for large image data sets

(2015) Tobias Pietzsch et al.   NATURE METHODS

Efficient processing and analysis of large-scale light-sheet microscopy data

(2015) Fernando Amat et al.   Nature Protocols

Nuclear genomic signals of the ‘microturbellarian’ roots of platyhelminth evolutionary innovation

(2015) Christopher E Laumer et al.   eLife

Efficient Bayesian-based multiview deconvolution

(2014) Stephan Preibisch et al.   NATURE METHODS

Extensible visualization and analysis for multidimensional images using Vaa3D

(2014) Hanchuan Peng et al.   Nature Protocols

OpenSpinMicroscopy: an open-source integrated microscopy platform

(2013) Emilio J Gualda et al.   NATURE METHODS

OpenSPIM: an open-access light-sheet microscopy platform

(2013) Peter G Pitrone et al.   NATURE METHODS

Put a tiger in your tank: the polyclad flatworm Maritigrella crozieri as a proposed model for evo-devo

(2013) François Lapraz et al.   EvoDevo

Slicing embryos gently with laser light sheets

(2012) Jan Huisken   BIOESSAYS

Multilayer mounting enables long-term imaging of zebrafish development in a light sheet microscope

(2012) A. Kaufmann et al.   DEVELOPMENT

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Whole-body gene expression pattern registration in Platynereis larvae

(2012) Albina Asadulina et al.   EvoDevo

Profiling by Image Registration Reveals Common Origin of Annelid Mushroom Bodies and Vertebrate Pallium

(2010) Raju Tomer et al.   CELL

Embryonic and post-embryonic development of the polyclad flatworm Maritigrella crozieri; implications for the evolution of spiralian life history traits

(2010) Kate A Rawlinson   Frontiers in Zoology

Software for bead-based registration of selective plane illumination microscopy data

(2010) Stephan Preibisch et al.   NATURE METHODS

A line scanned light-sheet microscope with phase shaped self-reconstructing beams

(2010) Florian O. Fahrbach et al.   OPTICS EXPRESS

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE