Nuclear genomic signals of the ‘microturbellarian’ roots of platyhelminth evolutionary innovation
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Title
Nuclear genomic signals of the ‘microturbellarian’ roots of platyhelminth evolutionary innovation
Authors
Keywords
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Journal
eLife
Volume 4, Issue -, Pages -
Publisher
eLife Sciences Organisation, Ltd.
Online
2015-03-12
DOI
10.7554/elife.05503
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Note: Only part of the references are listed.- ASTRAL: genome-scale coalescent-based species tree estimation
- (2014) S. Mirarab et al. BIOINFORMATICS
- Inclusive taxon sampling suggests a single, stepwise origin of ectolecithality in Platyhelminthes
- (2014) Christopher E. Laumer et al. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- Whole-Body Acoel Regeneration Is Controlled by Wnt and Bmp-Admp Signaling
- (2014) Mansi Srivastava et al. CURRENT BIOLOGY
- Comparative Genomics of Flatworms (Platyhelminthes) Reveals Shared Genomic Features of Ecto- and Endoparastic Neodermata
- (2014) Christoph Hahn et al. Genome Biology and Evolution
- Evaluating Topological Conflict in Centipede Phylogeny Using Transcriptomic Data Sets
- (2014) Rosa Fernández et al. MOLECULAR BIOLOGY AND EVOLUTION
- Platyzoan Paraphyly Based on Phylogenomic Data Supports a Noncoelomate Ancestry of Spiralia
- (2014) Torsten H. Struck et al. MOLECULAR BIOLOGY AND EVOLUTION
- Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics
- (2014) Ya Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Novel Information Theory-Based Measures for Quantifying Incongruence among Phylogenetic Trees
- (2014) Leonidas Salichos et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda
- (2014) F. Zapata et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Maximum Likelihood Inference of Small Trees in the Presence of Long Branches
- (2014) Sarah L. Parks et al. SYSTEMATIC BIOLOGY
- The diversity, development and evolution of polyclad flatworm larvae
- (2014) Kate A Rawlinson EvoDevo
- High-Throughput Genomic Data in Systematics and Phylogenetics
- (2013) Emily Moriarty Lemmon et al. Annual Review of Ecology Evolution and Systematics
- Selecting informative subsets of sparse supermatrices increases the chance to find correct trees
- (2013) Bernhard Misof et al. BMC BIOINFORMATICS
- Agalma: an automated phylogenomics workflow
- (2013) Casey W Dunn et al. BMC BIOINFORMATICS
- SuperQ: Computing Supernetworks from Quartets
- (2013) Stefan Grunewald et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Substantial Loss of Conserved and Gain of Novel MicroRNA Families in Flatworms
- (2013) Bastian Fromm et al. MOLECULAR BIOLOGY AND EVOLUTION
- Decisive Data Sets in Phylogenomics: Lessons from Studies on the Phylogenetic Relationships of Primarily Wingless Insects
- (2013) Emiliano Dell’Ampio et al. MOLECULAR BIOLOGY AND EVOLUTION
- A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny
- (2013) Matthias Bernt et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Adult somatic stem cells in the human parasite Schistosoma mansoni
- (2013) James J. Collins III et al. NATURE
- The genomes of four tapeworm species reveal adaptations to parasitism
- (2013) Isheng J. Tsai et al. NATURE
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- A Comprehensive Molecular Phylogeny of Dalytyphloplanida (Platyhelminthes: Rhabdocoela) Reveals Multiple Escapes from the Marine Environment and Origins of Symbiotic Relationships
- (2013) Niels Van Steenkiste et al. PLoS One
- Tapeworm Eggs in a 270 Million-Year-Old Shark Coprolite
- (2013) Paula C. Dentzien-Dias et al. PLoS One
- Relative Amino Acid Composition Signatures of Organisms and Environments
- (2013) Alexandra Moura et al. PLoS One
- PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment
- (2013) Nicolas Lartillot et al. SYSTEMATIC BIOLOGY
- Put a tiger in your tank: the polyclad flatworm Maritigrella crozieri as a proposed model for evo-devo
- (2013) François Lapraz et al. EvoDevo
- It's No Fluke: The Planarian as a Model for Understanding Schistosomes
- (2013) James J. Collins et al. PLoS Pathogens
- Functional genomic characterization of neoblast-like stem cells in larval Schistosoma mansoni
- (2013) Bo Wang et al. eLife
- Q&A: What is regeneration, and why look to planarians for answers?
- (2012) Alejandro Sánchez Alvarado BMC BIOLOGY
- The Magnitude of Global Marine Species Diversity
- (2012) Ward Appeltans et al. CURRENT BIOLOGY
- A Deep Exploration of the Transcriptome and “Excretory/Secretory” Proteome of AdultFascioloides magna
- (2012) Cinzia Cantacessi et al. MOLECULAR & CELLULAR PROTEOMICS
- Modeling Protein Evolution with Several Amino Acid Replacement Matrices Depending on Site Rates
- (2012) S. Q. Le et al. MOLECULAR BIOLOGY AND EVOLUTION
- Adding resolution to ordinal level relationships of tapeworms (Platyhelminthes: Cestoda) with large fragments of mtDNA
- (2012) Andrea Waeschenbach et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Insights into bilaterian evolution from three spiralian genomes
- (2012) Oleg Simakov et al. NATURE
- Accounting For Alignment Uncertainty in Phylogenomics
- (2012) Martin Wu et al. PLoS One
- NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
- (2012) Ravi K. Patel et al. PLoS One
- Library Preparation and Multiplex Capture for Massive Parallel Sequencing Applications Made Efficient and Easy
- (2012) Mårten Neiman et al. PLoS One
- Evaluating de Bruijn Graph Assemblers on 454 Transcriptomic Data
- (2012) Xianwen Ren et al. PLoS One
- Two methods for full-length RNA sequencing for low quantities of cells and single cells
- (2012) X. Pan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- From Trajectories to Averages: An Improved Description of the Heterogeneity of Substitution Rates Along Lineages
- (2012) Stéphane Guindon SYSTEMATIC BIOLOGY
- Developmental diversity in free-living flatworms
- (2012) José Martín-Durán et al. EvoDevo
- Reevaluating the Arthropod Tree of Life
- (2011) Gonzalo Giribet et al. Annual Review of Entomology
- Lack of metabolic ageing in the long-lived flatworm Schmidtea polychroa
- (2011) Stijn Mouton et al. EXPERIMENTAL GERONTOLOGY
- Acoelomorph flatworms are deuterostomes related to Xenoturbella
- (2011) Hervé Philippe et al. NATURE
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- GeneDB--an annotation database for pathogens
- (2011) F. J. Logan-Klumpler et al. NUCLEIC ACIDS RESEARCH
- Cestode genomics - progress and prospects for advancing basic and applied aspects of flatworm biology
- (2011) P. D. OLSON et al. PARASITE IMMUNOLOGY
- Constitutive gene expression and the specification of tissue identity in adult planarian biology
- (2011) Peter W. Reddien TRENDS IN GENETICS
- The socioeconomic burden of parasitic zoonoses: Global trends
- (2011) Paul R. Torgerson et al. VETERINARY PARASITOLOGY
- Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
- (2011) Hervé Philippe et al. PLOS BIOLOGY
- The draft genome of the carcinogenic human liver fluke Clonorchis sinensis
- (2011) Xiaoyun Wang et al. GENOME BIOLOGY
- DendroPy: a Python library for phylogenetic computing
- (2010) J. Sukumaran et al. BIOINFORMATICS
- ETE: a python Environment for Tree Exploration
- (2010) Jaime Huerta-Cepas et al. BMC BIOINFORMATICS
- BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
- (2010) Alexis Criscuolo et al. BMC EVOLUTIONARY BIOLOGY
- Embryonic and post-embryonic development of the polyclad flatworm Maritigrella crozieri; implications for the evolution of spiralian life history traits
- (2010) Kate A Rawlinson Frontiers in Zoology
- Closing the mitochondrial circle on paraphyly of the Monogenea (Platyhelminthes) infers evolution in the diet of parasitic flatworms
- (2010) Elizabeth M. Perkins et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
- Ultrastructure of excretory system in Bothrioplana semperi (Platyhelminthes, Turbellaria)
- (2010) E. E. Kornakova JOURNAL OF EVOLUTIONARY BIOCHEMISTRY AND PHYSIOLOGY
- Five new Polycladida (Platyhelminthes: Acotylea) species from the Aegean Sea with remarks on the prostatic structures
- (2010) Veronica N. Bulnes JOURNAL OF NATURAL HISTORY
- Ontogenetische Studien an Turbellarien: ein Beitrag zur Evolution der Dotterverarbeitung im ektolecithalen Ei
- (2010) Erich Reisinger et al. JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH
- Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life
- (2010) C. T. Hittinger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Exposed proteins of the Schistosoma japonicum tegument
- (2009) Jason Mulvenna et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
- The genome of the blood fluke Schistosoma mansoni
- (2009) Matthew Berriman et al. NATURE
- Echinococcus multilocularis as an experimental model in stem cell research and molecular host-parasite interaction
- (2009) K. BREHM PARASITOLOGY
- Assessing the root of bilaterian animals with scalable phylogenomic methods
- (2009) A. Hejnol et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- How to become a parasite – lessons from the genomes of nematodes
- (2009) Christoph Dieterich et al. TRENDS IN GENETICS
- Phyutility: a phyloinformatics tool for trees, alignments and molecular data
- (2008) S. A. Smith et al. BIOINFORMATICS
- Algorithm of OMA for large-scale orthology inference
- (2008) Alexander CJ Roth et al. BMC BIOINFORMATICS
- Recent developments in the MAFFT multiple sequence alignment program
- (2008) K. Katoh et al. BRIEFINGS IN BIOINFORMATICS
- Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data
- (2008) T.-K. Seo MOLECULAR BIOLOGY AND EVOLUTION
- Phylogeny of Catenulida and support for Platyhelminthes
- (2008) K LARSSON et al. ORGANISMS DIVERSITY & EVOLUTION
- Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo
- (2008) M. Pagel et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
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