Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus

Anti-Obesity Effect of Carotenoids: Direct Impact on Adipose Tissue and Adipose Tissue-Driven Indirect Effects

(2019) Lourdes Mounien et al.   Nutrients

Bioactive Properties of Carotenoids in Human Health

(2019) Amengual   Nutrients

Phylogenetic analyses of the genes involved in carotenoid biosynthesis in algae

(2018) Shanshan Wang et al.   ACTA OCEANOLOGICA SINICA

Advances in gap-filling genome-scale metabolic models and model-driven experiments lead to novel metabolic discoveries

(2018) Shu Pan et al.   CURRENT OPINION IN BIOTECHNOLOGY

HMMER web server: 2018 update

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A global perspective on carotenoids: Metabolism, biotechnology, and benefits for nutrition and health

(2018) Manuel Rodriguez-Concepcion et al.   PROGRESS IN LIPID RESEARCH

Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models

(2018) Méziane Aite et al.   PLoS Computational Biology

Comparative genomics of molybdenum utilization in prokaryotes and eukaryotes

(2018) Ting Peng et al.   BMC GENOMICS

Structural elucidation of fucoidan from Cladosiphon okamuranus (Okinawa mozuku)

(2018) Seng Joe Lim et al.   FOOD CHEMISTRY

The Gene Ontology Resource: 20 years and still GOing strong

(2018)   NUCLEIC ACIDS RESEARCH

Diversity and evolution of cytochromes P450 in stramenopiles

(2018) Linhong Teng et al.   PLANTA

Hybrid metabolic network completion

(2018) CLÉMENCE FRIOUX et al.   THEORY AND PRACTICE OF LOGIC PROGRAMMING

Control of elicitor-induced oxidative burst by abscisic acid associated with growth of Saccharina japonica (Phaeophyta, Laminariales) sporophytes

(2017) Kazuki Shimizu et al.   JOURNAL OF APPLIED PHYCOLOGY

The MetaCyc database of metabolic pathways and enzymes

(2017) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

(2017) Donald M. Bryant et al.   Cell Reports

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

(2017) Sylvain Prigent et al.   PLoS Computational Biology

The Molybdenum Cofactor Biosynthesis Network: In vivo Protein-Protein Interactions of an Actin Associated Multi-Protein Complex

(2017) David Kaufholdt et al.   Frontiers in Plant Science

Detection of bacterial contaminants and hybrid sequences in the genome of the kelp Saccharina japonica using Taxoblast

(2017) Simon M. Dittami et al.   PeerJ

Comparative characterization of two GDP-mannose dehydrogenase genes from Saccharina japonica (Laminariales, Phaeophyceae)

(2016) Pengyan Zhang et al.   BMC PLANT BIOLOGY

A draft genome of the brown alga,Cladosiphon okamuranus, S-strain: a platform for future studies of ‘mozuku’ biology

(2016) Koki Nishitsuji et al.   DNA RESEARCH

Four new compounds from edible algae Cladosiphon okamuranus and Chlorella sorokiniana and their bioactivities

(2016) Kun-Ching Cheng et al.   Phytochemistry Letters

Does bryozoan colonization alter the biochemical composition of Saccharina japonica affecting food safety and quality?

(2015) Paulos Getachew et al.   BOTANICA MARINA

Versatility of carotenoids: An integrated view on diversity, evolution, functional roles and environmental interactions

(2015) Raquel Esteban et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Photosynthetic Pigments in Diatoms

(2015) Paulina Kuczynska et al.   Marine Drugs

Do genome-scale models need exact solvers or clearer standards?

(2015) A. Ebrahim et al.   Molecular Systems Biology

The re-emergence of natural products for drug discovery in the genomics era

(2015) Alan L. Harvey et al.   NATURE REVIEWS DRUG DISCOVERY

MetaNetX/MNXref – reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks

(2015) Sébastien Moretti et al.   NUCLEIC ACIDS RESEARCH

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

(2015) Zachary A. King et al.   NUCLEIC ACIDS RESEARCH

Barley molybdenum cofactor sulfurase (MCSU): sequencing, modeling, and its comparison to other higher plants

(2015) Ertuğrul FİLİZ et al.   Turkish Journal of Agriculture and Forestry

Saccharina genomes provide novel insight into kelp biology

(2015) Naihao Ye et al.   Nature Communications

Phylogenetic analysis and evolutionary studies of plant carotenoid cleavage dioxygenase gene

(2014) R. Priya et al.   GENE

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

The genome-scale metabolic network ofEctocarpus siliculosus(EctoGEM): a resource to study brown algal physiology and beyond

(2014) Sylvain Prigent et al.   PLANT JOURNAL

Methylerythritol Phosphate Pathway of Isoprenoid Biosynthesis

(2013) Lishan Zhao et al.   Annual Review of Biochemistry

Structural basis of carotenoid cleavage: From bacteria to mammals

(2013) Xuewu Sui et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Enzymology of the carotenoid cleavage dioxygenases: Reaction mechanisms, inhibition and biochemical roles

(2013) Peter J. Harrison et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Quantitative profiling method for phytohormones and betaines in algae by liquid chromatography electrospray ionization tandem mass spectrometry

(2013) Xiujuan Wang et al.   BIOMEDICAL CHROMATOGRAPHY

Evolutionary origins, molecular cloning and expression of carotenoid hydroxylases in eukaryotic photosynthetic algae

(2013) Hongli Cui et al.   BMC GENOMICS

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

(2013) Ali Ebrahim et al.   BMC Systems Biology

Functions, Therapeutic Applications, and Synthesis of Retinoids and Carotenoids

(2013) Rosana Álvarez et al.   CHEMICAL REVIEWS

The challenge of constructing, classifying, and representing metabolic pathways

(2013) Ron Caspi et al.   FEMS MICROBIOLOGY LETTERS

Biosynthetic Pathway and Health Benefits of Fucoxanthin, an Algae-Specific Xanthophyll in Brown Seaweeds

(2013) Koji Mikami et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Molybdenum Cofactor

(2013) Ralf R. Mendel   JOURNAL OF BIOLOGICAL CHEMISTRY

Mannitol metabolism in brown algae involves a new phosphatase family

(2013) Agnès Groisillier et al.   JOURNAL OF EXPERIMENTAL BOTANY

Carotenoid oxidation products as stress signals in plants

(2013) Michel Havaux   PLANT JOURNAL

Dead End Metabolites - Defining the Known Unknowns of the E. coli Metabolic Network

(2013) Amanda Mackie et al.   PLoS One

The Plant Short-Chain Dehydrogenase (SDR) superfamily: genome-wide inventory and diversification patterns

(2012) Hanane Moummou et al.   BMC PLANT BIOLOGY

Biosynthesis of fucoxanthin and diadinoxanthin and function of initial pathway genes in Phaeodactylum tricornutum

(2012) M. Dambek et al.   JOURNAL OF EXPERIMENTAL BOTANY

Functional properties of carotenoids originating from algae

(2012) Efterpi Christaki et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Thermal stabilities of polyphenols and fatty acids in Laminaria japonica hydrolysates produced using subcritical water

(2012) Jung-Nam Park et al.   KOREAN JOURNAL OF CHEMICAL ENGINEERING

ORCAE: online resource for community annotation of eukaryotes

(2012) Lieven Sterck et al.   NATURE METHODS

Evolution of Abscisic Acid Synthesis and Signaling Mechanisms

(2011) Felix Hauser et al.   CURRENT BIOLOGY

Carotenoids in Algae: Distributions, Biosyntheses and Functions

(2011) Shinichi Takaichi   Marine Drugs

Carotenoids and their cleavage products: Biosynthesis and functions

(2011) Michael H. Walter et al.   NATURAL PRODUCT REPORTS

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Molecular Evolution of Lycopene Cyclases Involved in the Formation of Carotenoids in Eukaryotic Algae

(2011) Hongli Cui et al.   PLANT MOLECULAR BIOLOGY REPORTER

Molybdenum enzymes in higher organisms

(2010) Russ Hille et al.   COORDINATION CHEMISTRY REVIEWS

HIGH POLYUNSATURATED FATTY ACID LEVELS IN TWO SUBTROPICAL MACROALGAE, CLADOSIPHON OKAMURANUS AND CAULERPA LENTILLIFERA1

(2010) Hiroaki Saito et al.   JOURNAL OF PHYCOLOGY

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

(2010) J. Mark Cock et al.   NATURE

A protocol for generating a high-quality genome-scale metabolic reconstruction

(2010) Ines Thiele et al.   Nature Protocols

AraGEM, a Genome-Scale Reconstruction of the Primary Metabolic Network in Arabidopsis

(2010) C. G. de Oliveira Dal'Molin et al.   PLANT PHYSIOLOGY

Commercial-scale Preparation of Biofunctional Fucoxanthin from Waste Parts of Brown Sea Algae Laminalia japonica

(2009) Kazuki KANAZAWA et al.   FOOD SCIENCE AND TECHNOLOGY RESEARCH

A Darwinian view of metabolism: molecular properties determine fitness

(2009) R. D. Firn et al.   JOURNAL OF EXPERIMENTAL BOTANY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mechanism and regulation of the violaxanthin cycle: The role of antenna proteins and membrane lipids

(2008) Peter Jahns et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

The Carotenoid Pigment Zeaxanthin—A Review

(2008) M.G. Sajilata et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

The genusLaminaria sensu lato: recent insights and developments

(2008) Inka Bartsch et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Ancient Recruitment by Chromists of Green Algal Genes Encoding Enzymes for Carotenoid Biosynthesis

(2008) R. Frommolt et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Evolutionary Origins and Functions of the Carotenoid Biosynthetic Pathway in Marine Diatoms

(2008) Sacha Coesel et al.   PLoS One