Population structure and local selection yield high genomic variation inMimulus guttatus

A Segregating Inversion Generates Fitness Variation in Yellow Monkeyflower (Mimulus guttatus)

(2016) Y. W. Lee et al.   GENETICS

Refining the Use of Linkage Disequilibrium as a Robust Signature of Selective Sweeps

(2016) Guy S. Jacobs et al.   GENETICS

Refining the Use of Linkage Disequilibrium as a Robust Signature of Selective Sweeps

(2016) Guy S. Jacobs et al.   GENETICS

A genomic selection component analysis characterizes migration-selection balance

(2015) Patrick J. Monnahan et al.   EVOLUTION

Adaptive divergence in the monkey flower Mimulus guttatus is maintained by a chromosomal inversion

(2015) Alex D. Twyford et al.   EVOLUTION

Centromere-associated meiotic drive and female fitness variation inMimulus

(2015) Lila Fishman et al.   EVOLUTION

The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population

(2015) Justin B. Lack et al.   GENETICS

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum ofFicedulaflycatchers

(2015) Reto Burri et al.   GENOME RESEARCH

Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication

(2015) Ryan J. Haasl et al.   MOLECULAR ECOLOGY

The genomics of ecological vicariance in threespine stickleback fish

(2015) Marius Roesti et al.   Nature Communications

A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species

(2015) Shosei Kubota et al.   PLoS Genetics

The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population

(2015) Justin B. Lack et al.   GENETICS

Genomics of invasion: diversity and selection in introduced populations of monkeyflowers (Mimulus guttatus)

(2014) Joshua Puzey et al.   MOLECULAR ECOLOGY

The extent and genetic basis of phenotypic divergence in life history traits inMimulus guttatus

(2014) Jannice Friedman et al.   MOLECULAR ECOLOGY

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Replicate altitudinal clines reveal that evolutionary flexibility underlies adaptation to drought stress in annualMimulus guttatus

(2014) Nicholas J. Kooyers et al.   NEW PHYTOLOGIST

A High-Resolution Genetic Map of Yellow Monkeyflower Identifies Chemical Defense QTLs and Recombination Rate Variation

(2014) Liza M. Holeski et al.   G3-Genes Genomes Genetics

Speciation and Introgression between Mimulus nasutus and Mimulus guttatus

(2014) Yaniv Brandvain et al.   PLoS Genetics

The Standing Pool of Genomic Structural Variation in a Natural Population of Mimulus guttatus

(2013) Lex E. Flagel et al.   Genome Biology and Evolution

Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden

(2013) Quan Long et al.   NATURE GENETICS

Molecular hyperdiversity defines populations of the nematode Caenorhabditis brenneri

(2013) A. Dey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of Temperature-Responsive Flowering by MADS-Box Transcription Factor Repressors

(2013) J. H. Lee et al.   SCIENCE

Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython

(2012) Eric Talevich et al.   BMC BIOINFORMATICS

PLEIOTROPY IN THE WILD: THE DORMANCY GENEDOG1EXERTS CASCADING CONTROL ON LIFE CYCLES

(2012) George C. K. Chiang et al.   EVOLUTION

Megabase-Scale Inversion Polymorphism in the Wild Ancestor of Maize

(2012) Zhou Fang et al.   GENETICS

Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana

(2012) V. Nolte et al.   GENOME RESEARCH

Spatially and temporally varying selection on intrapopulation quantitative trait loci for a life history trade-off inMimulus guttatus

(2012) JULIUS P. MOJICA et al.   MOLECULAR ECOLOGY

Genome-wide patterns of latitudinal differentiation among populations ofDrosophila melanogasterfrom North America

(2012) Daniel K. Fabian et al.   MOLECULAR ECOLOGY

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Revisiting an Old Riddle: What Determines Genetic Diversity Levels within Species?

(2012) Ellen M. Leffler et al.   PLOS BIOLOGY

Genome-Wide Fine-Scale Recombination Rate Variation in Drosophila melanogaster

(2012) Andrew H. Chan et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Explaining the heritability of an ecologically significant trait in terms of individual quantitative trait loci

(2011) A. G. Scoville et al.   Biology Letters

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

Ecological Genomics of Anopheles gambiae Along a Latitudinal Cline: A Population-Resequencing Approach

(2011) C. Cheng et al.   GENETICS

Altitudinal Variation at Duplicated β-Globin Genes in Deer Mice: Effects of Selection, Recombination, and Gene Conversion

(2011) Jay F. Storz et al.   GENETICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Coalescent patterns for chromosomal inversions in divergent populations

(2011) R. F. Guerrero et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Is local adaptation in Mimulus guttatus caused by trade-offs at individual loci?

(2010) M. C. HALL et al.   MOLECULAR ECOLOGY

Viability selection prior to trait expression is an essential component of natural selection

(2010) J. P. Mojica et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation

(2010) David B. Lowry et al.   PLOS BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Plant traits correlated with generation time directly affect inbreeding depression and mating system and indirectly genetic structure

(2009) Jérôme Duminil et al.   BMC EVOLUTIONARY BIOLOGY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

Contribution of chromosomal polymorphisms to the G-matrix ofMimulus guttatus

(2009) Alison Scoville et al.   NEW PHYTOLOGIST

Genetic and physiological basis of adaptive salt tolerance divergence between coastal and inlandMimulus guttatus

(2009) David B. Lowry et al.   NEW PHYTOLOGIST

Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?

(2008) Ary A. Hoffmann et al.   Annual Review of Ecology Evolution and Systematics

Effects of Spatially Varying Selection on Nucleotide Diversity and Linkage Disequilibrium: Insights From Deer Mouse Globin Genes

(2008) J. F. Storz et al.   GENETICS

Patterns of Polymorphism and Demographic History in Natural Populations of Arabidopsis lyrata

(2008) Jeffrey Ross-Ibarra et al.   PLoS One

Centromere-Associated Female Meiotic Drive Entails Male Fitness Costs in Monkeyflowers

(2008) L. Fishman et al.   SCIENCE